C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CCR4 carbon catabolite repression 4-like (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023087 Ccrn4l 10090 + 3:51224447-51251644 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023849 Ccrn4l-001 51224447-51251644 protein_coding
  ENSMUST00000144826 Ccrn4l-002 51240206-51251624 retained_intron
  ENSMUST00000167780 Ccrn4l-201 51224470-51251631 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023849ENSMUST00000144826ENSMUST00000167780
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023849 N/A 1.542±0.04 N/A N/A N/A N/A N/A N/A 0.967±0.00 N/A N/A 3.126±1.63 N/A N/A
ENSMUST00000144826 8.420±0.63 2.998±0.83 10.147±1.59 3.848±1.16 7.317±1.80 8.901±0.70 4.743±0.32 6.100±0.70 8.196±6.63 6.995±0.37 6.914±0.82 5.983±2.99 73.784±25.75 4.495±1.33
ENSMUST00000167780 3.525±1.16 6.199±2.36 N/A N/A 4.518±1.07 18.495±3.11 5.826±0.86 1.891±0.00 5.883±5.19 2.016±0.18 N/A 4.386±1.82 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Q CIL_00001Q_0002 CGP 3:50364936-51251644
CIL_0006YJ CIL_0006YJ_0003 CGP 3:51224447-51340658

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000290 IGI deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003729 IDA mRNA binding
GO:0004535 IDA poly(A)-specific ribonuclease activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006397 IEA mRNA processing
GO:0007623 IEP circadian rhythm
GO:0009991 IDA response to extracellular stimulus
GO:0010629 IMP negative regulation of gene expression
GO:0032496 IDA response to lipopolysaccharide
GO:0032922 IMP circadian regulation of gene expression
GO:0033962 IGI cytoplasmic mRNA processing body assembly
GO:0042752 IMP regulation of circadian rhythm
GO:0045600 IMP positive regulation of fat cell differentiation
GO:0045668 IMP negative regulation of osteoblast differentiation
GO:0045995 IMP regulation of embryonic development
GO:0046872 IEA metal ion binding
GO:0048255 IMP mRNA stabilization
GO:0048471 IDA perinuclear region of cytoplasm
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077726 ccrn4la CCR4 carbon catabolite repression 4-like a (S. cerevisiae) protein_coding Danio_rerio
ENSDARG00000078525 CCRN4L (2 of 2) CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein_coding Danio_rerio
ENSG00000151014 CCRN4L CCR4 carbon catabolite repression 4-like (S. cerevisiae) protein_coding Homo_sapiens

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