C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4 carbon catabolite repression 4-like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000280614 CCRN4L-001 ENSG00000151014 9606 + 4:139015789-139045752 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000280614
Transcript ID Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000280614 0.807±0.00 1.533±0.00 1.788±0.00 0.950±0.00 1.033±0.10 2.330±1.54 1.224±0.43 1.353±0.76 2.848±2.37 0.880±0.28 1.924±0.25 1.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001Q CIL_00001Q_0001 CGP 4:138164097-139045752
CIL_0006YJ CIL_0006YJ_0002 CGP 4:139015789-139177218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000290 IEA deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 IEA cytoplasmic mRNA processing body
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003729 ISS mRNA binding
GO:0004535 ISS poly(A)-specific ribonuclease activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 ISS cytoplasm
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006397 IEA mRNA processing
GO:0007623 IEA circadian rhythm
GO:0009991 ISS response to extracellular stimulus
GO:0010629 ISS negative regulation of gene expression
GO:0032496 ISS response to lipopolysaccharide
GO:0032922 ISS circadian regulation of gene expression
GO:0033962 IEA cytoplasmic mRNA processing body assembly
GO:0042752 ISS regulation of circadian rhythm
GO:0045600 ISS positive regulation of fat cell differentiation
GO:0045668 ISS negative regulation of osteoblast differentiation
GO:0045995 IEA regulation of embryonic development
GO:0046872 IEA metal ion binding
GO:0048255 ISS mRNA stabilization
GO:0048471 ISS perinuclear region of cytoplasm
GO:0090503 IEA RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167780 Ccrn4l-201 protein_coding Mus_musculus 0 1356
ENSMUST00000023849 Ccrn4l-001 protein_coding Mus_musculus 0 1356
ENSMUST00000144826 Ccrn4l-002 retained_intron Mus_musculus 0 1216

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