C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UPF2 regulator of nonsense transcripts homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357604 UPF2-002 ENSG00000151461 9606 - 10:11920022-12042834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000357604
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000357604 6.722±0.00 6.504±0.00 1.647±0.00 6.121±0.00 4.449±0.65 6.527±4.03 3.260±2.27 3.924±1.82 2.967±0.12 3.826±0.04 5.024±4.07 6.315±1.62 5.339±3.44 20.470±7.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EV CIL_0008EV_0001 VISTA 10:11379308-11980769

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0005488 IEA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006406 TAS mRNA export from nucleus
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035145 IDA exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060092 Upf2-001 protein_coding Mus_musculus 0 7027
ENSMUST00000128200 Upf2-002 protein_coding Mus_musculus 0 3829
ENSMUST00000144901 Upf2-003 processed_transcript Mus_musculus 0 268

Loading