C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex 1, sigma 3 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152056 AP1S3 9606 - 2:223751686-223838027 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000334271 AP1S3-003 223756990-223837570 nonsense_mediated_decay
  ENST00000396653 AP1S3-005 223765078-223837582 protein_coding
  ENST00000396654 AP1S3-007 223758482-223837582 protein_coding
  ENST00000409375 AP1S3-006 223765310-223837541 protein_coding
  ENST00000415298 AP1S3-002 223756989-223837735 nonsense_mediated_decay
  ENST00000443700 AP1S3-001 223751686-223837602 protein_coding
  ENST00000444408 AP1S3-004 223765268-223838027 protein_coding
  ENST00000446015 AP1S3-008 223765177-223837484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334271ENST00000396653ENST00000396654ENST00000409375ENST00000415298ENST00000443700ENST00000446015
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334271 0.159±0.00 N/A N/A 0.134±0.12 0.349±0.00 0.068±0.00 0.074±0.00 N/A 0.284±0.00 0.553±0.00 0.076±0.00 0.335±0.00 N/A N/A
ENST00000396653 N/A N/A N/A N/A N/A 1.917±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396654 N/A N/A N/A N/A N/A N/A N/A N/A 0.764±0.00 0.654±0.00 N/A 1.635±1.15 3.831±0.00 N/A
ENST00000409375 N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415298 N/A N/A N/A N/A N/A 0.251±0.00 N/A N/A N/A 0.306±0.00 N/A N/A N/A N/A
ENST00000443700 N/A 0.427±0.00 N/A 0.033±0.00 0.119±0.01 0.015±0.00 N/A 1.158±0.00 0.107±0.07 0.311±0.08 N/A 0.156±0.10 0.187±0.00 0.446±0.37
ENST00000446015 N/A N/A 2.553±0.00 N/A 1.111±0.00 N/A 0.223±0.00 0.869±0.00 N/A N/A N/A 5.642±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AM CIL_0004AM_0003 CGP 2:223596940-223838027
CIL_0006XJ CIL_0006XJ_0001 CGP 2:223751686-223945387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005765 TAS lysosomal membrane
GO:0005829 TAS cytosol
GO:0005905 IEA coated pit
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016032 TAS viral process
GO:0016192 IEA vesicle-mediated transport
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0030117 IEA membrane coat
GO:0030659 TAS cytoplasmic vesicle membrane
GO:0032588 TAS trans-Golgi network membrane
GO:0050690 TAS regulation of defense response to virus by virus
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027966 ap1s3b adaptor-related protein complex 1, sigma 3 subunit, b protein_coding Danio_rerio
ENSDARG00000076073 AP1S3 (2 of 2) adaptor-related protein complex 1, sigma 3 subunit protein_coding Danio_rerio
ENSMUSG00000054702 Ap1s3 adaptor-related protein complex AP-1, sigma 3 protein_coding Mus_musculus

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