C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 1, sigma 3 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334271 AP1S3-003 ENSG00000152056 9606 - 2:223756990-223837570 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryENST00000334271
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000334271 0.159±0.00 0.134±0.12 0.349±0.00 0.068±0.00 0.074±0.00 0.284±0.00 0.553±0.00 0.076±0.00 0.335±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AM CIL_0004AM_0003 CGP 2:223596940-223838027
CIL_0006XJ CIL_0006XJ_0001 CGP 2:223751686-223945387

Gene Ontology

GO IDEvidence TypeGO Description
GO:0006810 IEA transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160706 Ap1s3-003 nonsense_mediated_decay Mus_musculus 0 429
ENSMUST00000159312 Ap1s3-002 nonsense_mediated_decay Mus_musculus 0 337
ENSMUST00000162342 Ap1s3-001 protein_coding Mus_musculus 0 337
ENSMUST00000179174 Gm8532-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000121079 Gm15786-001 processed_pseudogene Mus_musculus 0 215

Loading