C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004AM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017470-ENSDARG00000076073 CGP 7955 15:41873434-41887571
GeneTranscriptPositionBiotype
ENSDARG00000017470 (scg2a)
secretogranin II (chromogranin C) a
ENSDART00000003653 (scg2a-201) 41873434-41875056 protein_coding
ENSDARG00000076073 (AP1S3 (2 of 2))
adaptor-related protein complex 1, sigma 3 subunit
ENSDART00000110352 (AP1S3 (2 of 2)-201) 41887031-41887571 protein_coding
CIL_0004AM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000038574-ENSDARG00000027966 CGP 7955 2:47704725-47743534
GeneTranscriptPositionBiotype
ENSDARG00000027966 (ap1s3b)
adaptor-related protein complex 1, sigma 3 subunit, b
ENSDART00000038228 (ap1s3b-001) 47709966-47743534 protein_coding
ENSDARG00000038574 (scg2b)
secretogranin II (chromogranin C), b
ENSDART00000112579 (scg2b-001) 47704725-47707925 protein_coding
ENSDART00000149967 (scg2b-002) 47705216-47706101 protein_coding
CIL_0004AM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171951-ENSG00000152056 CGP 9606 2:223596940-223838027
GeneTranscriptPositionBiotype
ENSG00000152056 (AP1S3)
adaptor-related protein complex 1, sigma 3 subunit
ENST00000334271 (AP1S3-003) 223756990-223837570 nonsense_mediated_decay
ENST00000396653 (AP1S3-005) 223765078-223837582 protein_coding
ENST00000396654 (AP1S3-007) 223758482-223837582 protein_coding
ENST00000409375 (AP1S3-006) 223765310-223837541 protein_coding
ENST00000415298 (AP1S3-002) 223756989-223837735 nonsense_mediated_decay
ENST00000443700 (AP1S3-001) 223751686-223837602 protein_coding
ENST00000444408 (AP1S3-004) 223765268-223838027 protein_coding
ENST00000446015 (AP1S3-008) 223765177-223837484 protein_coding
ENSG00000171951 (SCG2)
secretogranin II
ENST00000305409 (SCG2-001) 223596940-223602503 protein_coding
ENST00000421386 (SCG2-003) 223598851-223602284 protein_coding
ENST00000433889 (SCG2-002) 223598906-223602361 protein_coding
ENSG00000226539 (AC012512.1)
ENST00000446594 (AC012512.1-001) 223704621-223705338 processed_pseudogene
CIL_0004AM_0004 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050711-ENSMUSG00000054702 CGP 10090 1:79434669-79671972
GeneTranscriptPositionBiotype
ENSMUSG00000050711 (Scg2)
secretogranin II
ENSMUST00000049972 (Scg2-001) 79434669-79440120 protein_coding
ENSMUST00000185234 (Scg2-002) 79434669-79440042 protein_coding
ENSMUSG00000054702 (Ap1s3)
adaptor-related protein complex AP-1, sigma 3
ENSMUST00000159312 (Ap1s3-002) 79608845-79671965 nonsense_mediated_decay
ENSMUST00000160706 (Ap1s3-003) 79609186-79671968 nonsense_mediated_decay
ENSMUST00000162342 (Ap1s3-001) 79606876-79671972 protein_coding
ENSMUSG00000099562 (RP23-465C10.2)
predicted gene, 19027
ENSMUST00000187291 (RP23-465C10.2-001) 79505803-79507157 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AM_0001ENSDARG00000017470ENSDART00000003653ENSDARG00000076073ENSDART00000110352CIL_0004AM_0002ENSDARG00000027966ENSDART00000038228ENSDARG00000038574ENSDART00000112579ENSDART00000149967CIL_0004AM_0003ENSG00000152056ENST00000334271ENST00000396653ENST00000396654ENST00000409375ENST00000415298ENST00000443700ENST00000444408ENST00000446015ENSG00000171951ENST00000305409ENST00000421386ENST00000433889ENSG00000226539ENST00000446594CIL_0004AM_0004ENSMUSG00000050711ENSMUST00000049972ENSMUST00000185234ENSMUSG00000054702ENSMUST00000159312ENSMUST00000160706ENSMUST00000162342ENSMUSG00000099562ENSMUST00000187291
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004AM_0001ENSDARG00000017470ENSDART00000003653ENSDARG00000076073ENSDART00000110352CIL_0004AM_0002ENSDARG00000027966ENSDART00000038228ENSDARG00000038574ENSDART00000112579ENSDART00000149967CIL_0004AM_0003ENSG00000152056ENST00000334271ENST00000396653ENST00000396654ENST00000409375ENST00000415298ENST00000443700ENST00000446015ENSG00000171951ENST00000305409ENST00000421386ENST00000433889ENSG00000226539ENST00000446594CIL_0004AM_0004ENSMUSG00000050711ENSMUST00000049972ENSMUST00000185234ENSMUSG00000054702ENSMUST00000159312ENSMUST00000160706ENSMUST00000162342ENSMUSG00000099562ENSMUST00000187291
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017470 ENSDART00000003653 N/A N/A N/A 49.445±31.88 N/A N/A 0.151±0.00 2.224±0.00 0.199±0.00 N/A 1.675±0.00 N/A N/A N/A
ENSDARG00000076073 ENSDART00000110352 N/A N/A N/A 15.286±0.00 N/A N/A 5.274±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000027966 ENSDART00000038228 N/A N/A N/A 3.056±0.99 N/A N/A 1.624±0.09 16.464±2.51 0.914±0.00 N/A 0.977±0.00 N/A N/A N/A
ENSDARG00000038574 ENSDART00000112579 N/A N/A N/A 207.884±42.03 N/A N/A 0.526±0.21 1.736±0.57 0.139±0.00 N/A 8.518±0.00 N/A N/A N/A
ENSDART00000149967 N/A N/A N/A N/A N/A N/A N/A N/A 0.204±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000152056 ENST00000334271 0.159±0.00 N/A N/A 0.134±0.12 0.349±0.00 0.068±0.00 0.074±0.00 N/A 0.284±0.00 0.553±0.00 0.076±0.00 0.335±0.00 N/A N/A
ENST00000396653 N/A N/A N/A N/A N/A 1.917±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000396654 N/A N/A N/A N/A N/A N/A N/A N/A 0.764±0.00 0.654±0.00 N/A 1.635±1.15 3.831±0.00 N/A
ENST00000409375 N/A N/A N/A 0.358±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000415298 N/A N/A N/A N/A N/A 0.251±0.00 N/A N/A N/A 0.306±0.00 N/A N/A N/A N/A
ENST00000443700 N/A 0.427±0.00 N/A 0.033±0.00 0.119±0.01 0.015±0.00 N/A 1.158±0.00 0.107±0.07 0.311±0.08 N/A 0.156±0.10 0.187±0.00 0.446±0.37
ENST00000444408 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446015 N/A N/A 2.553±0.00 N/A 1.111±0.00 N/A 0.223±0.00 0.869±0.00 N/A N/A N/A 5.642±0.00 N/A N/A
ENSG00000171951 ENST00000305409 0.996±0.00 0.032±0.00 0.056±0.00 24.735±14.07 0.736±0.69 3.869±3.08 0.048±0.02 0.117±0.09 0.077±0.00 0.198±0.17 0.021±0.01 1.024±0.60 0.271±0.14 0.192±0.06
ENST00000421386 N/A N/A N/A N/A N/A 0.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000433889 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.00 N/A N/A N/A N/A
ENSG00000226539 ENST00000446594 N/A 0.088±0.00 N/A N/A 0.476±0.00 N/A 0.052±0.01 0.044±0.00 N/A N/A N/A 0.068±0.02 0.446±0.21 0.039±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000050711 ENSMUST00000049972 N/A 12.362±2.93 0.131±0.01 8.220±1.99 N/A 0.459±0.19 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A
ENSMUST00000185234 0.038±0.02 16.614±5.87 0.069±0.00 39.737±44.66 0.036±0.00 1.497±0.31 0.022±0.01 0.083±0.03 0.028±0.02 0.038±0.02 0.017±0.01 0.123±0.05 0.019±0.01 0.157±0.14
ENSMUSG00000054702 ENSMUST00000159312 N/A N/A N/A N/A 3.154±0.82 6.063±1.46 N/A N/A N/A N/A N/A 4.159±0.00 N/A N/A
ENSMUST00000160706 27.131±1.66 1.008±0.40 N/A N/A 12.426±4.64 32.528±5.77 0.745±0.12 13.322±2.61 1.012±0.00 12.875±2.77 N/A 6.723±2.06 N/A N/A
ENSMUST00000162342 5.113±0.46 0.710±0.06 5.828±0.93 N/A 1.628±0.84 4.061±0.85 0.344±0.09 3.033±0.77 1.447±0.37 3.295±1.33 1.018±0.00 2.347±1.31 6.174±3.68 1.072±0.00
ENSMUSG00000099562 ENSMUST00000187291 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A N/A

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