C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex AP-1, sigma 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000054702 Ap1s3 10090 - 1:79606876-79671972 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000159312 Ap1s3-002 79608845-79671965 nonsense_mediated_decay
  ENSMUST00000160706 Ap1s3-003 79609186-79671968 nonsense_mediated_decay
  ENSMUST00000162342 Ap1s3-001 79606876-79671972 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159312ENSMUST00000160706ENSMUST00000162342
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159312 N/A N/A N/A 3.154±0.82 6.063±1.46 N/A N/A N/A N/A N/A 4.159±0.00 N/A N/A
ENSMUST00000160706 27.131±1.66 1.008±0.40 N/A 12.426±4.64 32.528±5.77 0.745±0.12 13.322±2.61 1.012±0.00 12.875±2.77 N/A 6.723±2.06 N/A N/A
ENSMUST00000162342 5.113±0.46 0.710±0.06 5.828±0.93 1.628±0.84 4.061±0.85 0.344±0.09 3.033±0.77 1.447±0.37 3.295±1.33 1.018±0.00 2.347±1.31 6.174±3.68 1.072±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AM CIL_0004AM_0004 CGP 1:79434669-79671972
CIL_0006XJ CIL_0006XJ_0002 CGP 1:79606876-79776143

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0005905 IEA coated pit
GO:0006886 IEA intracellular protein transport
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0031410 IEA cytoplasmic vesicle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027966 ap1s3b adaptor-related protein complex 1, sigma 3 subunit, b protein_coding Danio_rerio
ENSDARG00000076073 AP1S3 (2 of 2) adaptor-related protein complex 1, sigma 3 subunit protein_coding Danio_rerio
ENSG00000152056 AP1S3 adaptor-related protein complex 1, sigma 3 subunit protein_coding Homo_sapiens

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