C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Zic family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000152977 ZIC1 9606 + 3:147393422-147510293 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000282928 ZIC1-001 147409384-147416719 protein_coding
  ENST00000472523 ZIC1-003 147393422-147507986 processed_transcript
  ENST00000474034 ZIC1-004 147421327-147510293 processed_transcript
  ENST00000481840 ZIC1-006 147507941-147509905 processed_transcript
  ENST00000488404 ZIC1-002 147393895-147413680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282928ENST00000472523ENST00000474034ENST00000481840ENST00000488404
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282928 0.519±0.00 0.114±0.00 1.612±0.59 0.033±0.02 0.006±0.00 0.020±0.01 0.022±0.00 0.051±0.00 0.042±0.01 0.004±0.00 0.221±0.00 0.048±0.00
ENST00000472523 N/A N/A N/A 0.138±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474034 N/A N/A N/A N/A N/A N/A N/A N/A 0.179±0.08 N/A N/A N/A
ENST00000481840 N/A N/A N/A N/A N/A 0.158±0.00 N/A N/A 0.594±0.00 N/A N/A N/A
ENST00000488404 N/A N/A 9.099±0.93 N/A N/A 0.439±0.00 0.667±0.00 N/A 0.552±0.00 N/A N/A 1.349±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0001 UCNEbase 3:146747615-148369526
CIL_00092K CIL_00092K_0001 VISTA 3:147012442-147613983
CIL_00092J CIL_00092J_0001 VISTA 3:147031749-147633313
CIL_0008O7 CIL_0008O7_0001 VISTA 3:147107359-147708549
CIL_0009D8 CIL_0009D8_0001 VISTA 3:147360760-147962816
CIL_0009BL CIL_0009BL_0001 VISTA 3:147375234-147976562

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007389 ISS pattern specification process
GO:0007417 IEA central nervous system development
GO:0007420 IDA brain development
GO:0007628 IEA adult walking behavior
GO:0008589 ISS regulation of smoothened signaling pathway
GO:0021510 IEA spinal cord development
GO:0030154 IEA cell differentiation
GO:0042307 ISS positive regulation of protein import into nucleus
GO:0042472 ISS inner ear morphogenesis
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015567 zic1 zic family member 1 (odd-paired homolog, Drosophila) protein_coding Danio_rerio
ENSMUSG00000032368 Zic1 zinc finger protein of the cerebellum 1 protein_coding Mus_musculus

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