C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein of the cerebellum 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032368 Zic1 10090 - 9:91358058-91365810 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034927 Zic1-001 91358058-91365768 protein_coding
  ENSMUST00000065360 Zic1-002 91360500-91365810 protein_coding
  ENSMUST00000173121 Zic1-003 91361581-91363054 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034927ENSMUST00000065360ENSMUST00000173121
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034927 0.010±0.00 0.022±0.02 N/A 15.481±10.92 0.019±0.00 0.010±0.00 0.014±0.00 N/A 0.023±0.03 0.076±0.03 0.094±0.03 0.064±0.05 0.008±0.01 0.026±0.00
ENSMUST00000065360 N/A 0.022±0.00 0.016±0.00 64.818±0.95 0.058±0.03 N/A 0.025±0.02 0.012±0.00 0.077±0.11 0.053±0.02 0.261±0.11 N/A 0.026±0.02 0.033±0.01
ENSMUST00000173121 N/A N/A N/A N/A 0.358±0.13 N/A N/A N/A 0.133±0.02 0.284±0.17 N/A N/A 0.223±0.00 0.210±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0002 UCNEbase 9:90313955-92046042
CIL_0009BL CIL_0009BL_0002 VISTA 9:90773325-91374668
CIL_0009D8 CIL_0009D8_0002 VISTA 9:90787948-91390091
CIL_0008O7 CIL_0008O7_0002 VISTA 9:91066858-91668202
CIL_00092J CIL_00092J_0002 VISTA 9:91145767-91747284
CIL_00092K CIL_00092K_0002 VISTA 9:91162357-91763891
CIL_000589 CIL_000589_0002 CGP 9:91358058-91389348

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 NAS skeletal system development
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007389 IDA pattern specification process
GO:0007417 IGI central nervous system development
GO:0007420 IDA brain development
GO:0007628 IMP adult walking behavior
GO:0008589 IPI regulation of smoothened signaling pathway
GO:0021510 IMP spinal cord development
GO:0030154 IEA cell differentiation
GO:0042307 IDA positive regulation of protein import into nucleus
GO:0042472 ISS inner ear morphogenesis
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015567 zic1 zic family member 1 (odd-paired homolog, Drosophila) protein_coding Danio_rerio
ENSG00000152977 ZIC1 Zic family member 1 protein_coding Homo_sapiens

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