C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Zic family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000282928 ZIC1-001 ENSG00000152977 9606 + 3:147409384-147416719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000282928
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000282928 0.519±0.00 0.114±0.00 1.612±0.59 0.033±0.02 0.006±0.00 0.020±0.01 0.022±0.00 0.051±0.00 0.042±0.01 0.004±0.00 0.221±0.00 0.048±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0001 UCNEbase 3:146747615-148369526
CIL_00092K CIL_00092K_0001 VISTA 3:147012442-147613983
CIL_00092J CIL_00092J_0001 VISTA 3:147031749-147633313
CIL_0008O7 CIL_0008O7_0001 VISTA 3:147107359-147708549
CIL_0009D8 CIL_0009D8_0001 VISTA 3:147360760-147962816
CIL_0009BL CIL_0009BL_0001 VISTA 3:147375234-147976562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007389 ISS pattern specification process
GO:0007417 IEA central nervous system development
GO:0007420 IDA brain development
GO:0007628 IEA adult walking behavior
GO:0008589 ISS regulation of smoothened signaling pathway
GO:0021510 IEA spinal cord development
GO:0030154 IEA cell differentiation
GO:0042307 ISS positive regulation of protein import into nucleus
GO:0042472 ISS inner ear morphogenesis
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034927 Zic1-001 protein_coding Mus_musculus 0 2331
ENSMUST00000065360 Zic1-002 protein_coding Mus_musculus 0 2150
ENSMUST00000075888 Zic2-001 protein_coding Mus_musculus 0 645
ENSMUST00000173121 Zic1-003 processed_transcript Mus_musculus 0 486
ENSMUST00000088631 Zic3-002 protein_coding Mus_musculus 0 438
ENSMUST00000088627 Zic3-001 protein_coding Mus_musculus 0 438
ENSMUST00000088629 Zic3-003 protein_coding Mus_musculus 0 429
ENSMUST00000066384 Zic4-008 protein_coding Mus_musculus 0 422
ENSMUST00000172858 Zic4-010 retained_intron Mus_musculus 0 422
ENSMUST00000173933 Zic4-003 protein_coding Mus_musculus 0 422
ENSMUST00000172646 Zic4-001 protein_coding Mus_musculus 0 422
ENSMUST00000170572 Zic4-005 retained_intron Mus_musculus 0 300
ENSMUST00000174611 Zic4-004 retained_intron Mus_musculus 0 300
ENSDART00000127597 zic1-001 protein_coding Danio_rerio 3e-25 122

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