C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Zic family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000488404 ZIC1-002 ENSG00000152977 9606 + 3:147393895-147413680 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleTestisENST00000488404
Transcript ID Brain Kidney Liver Muscle Testis
ENST00000488404 9.099±0.93 0.439±0.00 0.667±0.00 0.552±0.00 1.349±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JF CIL_0007JF_0001 UCNEbase 3:146747615-148369526
CIL_00092K CIL_00092K_0001 VISTA 3:147012442-147613983
CIL_00092J CIL_00092J_0001 VISTA 3:147031749-147633313
CIL_0008O7 CIL_0008O7_0001 VISTA 3:147107359-147708549
CIL_0009D8 CIL_0009D8_0001 VISTA 3:147360760-147962816
CIL_0009BL CIL_0009BL_0001 VISTA 3:147375234-147976562

Gene Ontology

GO IDEvidence TypeGO Description
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065360 Zic1-002 protein_coding Mus_musculus 0 586
ENSMUST00000034927 Zic1-001 protein_coding Mus_musculus 0 586
ENSMUST00000173121 Zic1-003 processed_transcript Mus_musculus 0 486
ENSMUST00000088631 Zic3-002 protein_coding Mus_musculus 1e-38 163
ENSMUST00000088627 Zic3-001 protein_coding Mus_musculus 1e-38 163
ENSMUST00000088629 Zic3-003 protein_coding Mus_musculus 9e-36 154

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