C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: calcium regulated heat stable protein 1, 24kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153048 CARHSP1 9606 - 16:8852942-8869012 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000311052 CARHSP1-002 8854913-8869009 protein_coding
  ENST00000396593 CARHSP1-001 8852942-8868401 protein_coding
  ENST00000561530 CARHSP1-007 8854921-8868361 protein_coding
  ENST00000562586 CARHSP1-014 8859064-8868354 retained_intron
  ENST00000562843 CARHSP1-015 8858090-8868343 protein_coding
  ENST00000563815 CARHSP1-003 8857464-8869006 retained_intron
  ENST00000565287 CARHSP1-004 8855214-8869006 protein_coding
  ENST00000567554 CARHSP1-012 8855065-8861713 protein_coding
  ENST00000567626 CARHSP1-009 8859331-8861781 processed_transcript
  ENST00000567908 CARHSP1-008 8855231-8867887 protein_coding
  ENST00000568117 CARHSP1-010 8855271-8867428 protein_coding
  ENST00000568968 CARHSP1-013 8855290-8861777 protein_coding
  ENST00000569398 CARHSP1-011 8858418-8861773 protein_coding
  ENST00000569572 CARHSP1-005 8858913-8869006 retained_intron
  ENST00000570125 CARHSP1-006 8855234-8868719 protein_coding
  ENST00000610831 CARHSP1-201 8852943-8861810 protein_coding
  ENST00000611932 CARHSP1-202 8852943-8869012 protein_coding
  ENST00000614449 CARHSP1-203 8852943-8861810 protein_coding
  ENST00000618335 CARHSP1-204 8852943-8868719 protein_coding
  ENST00000619881 CARHSP1-205 8852943-8867428 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000311052ENST00000396593ENST00000561530ENST00000563815ENST00000567554ENST00000611932ENST00000614449ENST00000618335
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000311052 72.164±0.00 157.405±0.00 95.271±0.00 98.301±0.00 4.279±0.00 127.393±0.00 N/A 86.330±0.00 N/A 51.379±0.00 115.101±19.74 78.171±0.00
ENST00000396593 8.659±0.00 N/A N/A N/A 0.976±0.00 N/A 2.595±0.00 15.644±0.00 1.804±0.00 7.983±0.00 11.494±0.00 N/A
ENST00000561530 N/A N/A N/A N/A N/A N/A N/A 106.632±0.00 N/A N/A N/A N/A
ENST00000563815 N/A N/A N/A N/A N/A N/A N/A N/A 0.233±0.00 N/A N/A N/A
ENST00000567554 N/A N/A N/A N/A N/A N/A 17.581±0.00 N/A 1.451±0.00 71.388±0.00 95.509±0.00 125.107±47.65
ENST00000611932 N/A N/A N/A N/A N/A N/A N/A 14.611±0.00 N/A N/A N/A N/A
ENST00000614449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.419±0.00
ENST00000618335 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.963±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EW CIL_0000EW_0001 CGP 16:8788823-8869012
CIL_0000EV CIL_0000EV_0001 CGP 16:8852942-8964514

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000177 ISS cytoplasmic exosome (RNase complex)
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0019902 NAS phosphatase binding
GO:0035556 TAS intracellular signal transduction
GO:0043186 ISS P granule
GO:0043488 ISS regulation of mRNA stability
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053129 carhsp1 calcium regulated heat stable protein 1 protein_coding Danio_rerio
ENSMUSG00000008393 Carhsp1 calcium regulated heat stable protein 1 protein_coding Mus_musculus
ENSMUSG00000044434 Gm9791 predicted pseudogene 9791 pseudogene Mus_musculus

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