C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: INO80 complex subunit C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153391 INO80C 9606 - 18:35452230-35497991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283410 INO80C-004 35478995-35497979 retained_intron
  ENST00000334598 INO80C-001 35468333-35497991 protein_coding
  ENST00000441607 INO80C-002 35468463-35497943 protein_coding
  ENST00000585971 INO80C-014 35489078-35497960 retained_intron
  ENST00000586449 INO80C-007 35479331-35497935 nonsense_mediated_decay
  ENST00000586489 INO80C-009 35468584-35497649 protein_coding
  ENST00000587450 INO80C-005 35468671-35497960 protein_coding
  ENST00000589053 INO80C-006 35497509-35497942 retained_intron
  ENST00000589273 INO80C-010 35480467-35497599 protein_coding
  ENST00000590757 INO80C-008 35468334-35497904 protein_coding
  ENST00000591139 INO80C-011 35468711-35487470 protein_coding
  ENST00000592173 INO80C-003 35452230-35497933 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283410ENST00000334598ENST00000441607ENST00000585971ENST00000586449ENST00000586489ENST00000590757ENST00000591139ENST00000592173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283410 N/A N/A N/A N/A N/A 0.781±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000334598 3.351±0.00 N/A N/A N/A 1.561±0.00 2.871±0.00 4.314±0.00 2.612±2.25 1.654±1.52 1.730±1.49 1.685±0.00 6.815±1.48 15.600±5.64 7.725±0.00
ENST00000441607 N/A N/A N/A 1.906±0.00 4.636±0.00 4.374±0.00 5.410±0.00 N/A 4.398±0.00 6.075±0.00 3.456±3.18 2.521±0.00 3.404±0.00 9.832±0.00
ENST00000585971 N/A N/A N/A 1.066±0.82 N/A N/A N/A N/A N/A N/A N/A 3.533±0.00 N/A N/A
ENST00000586449 N/A N/A N/A 2.306±0.00 N/A N/A N/A 2.089±0.00 N/A N/A N/A 0.316±0.00 N/A N/A
ENST00000586489 3.749±0.00 N/A 0.428±0.00 0.404±0.00 2.948±0.00 0.748±0.00 N/A N/A N/A 0.343±0.00 N/A 0.403±0.00 N/A 26.261±2.87
ENST00000590757 N/A N/A N/A N/A N/A 1.066±0.00 N/A N/A 0.566±0.00 N/A N/A 0.570±0.00 N/A N/A
ENST00000591139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.592±0.00 N/A 9.521±0.00 53.627±0.00
ENST00000592173 0.529±0.00 4.229±0.00 0.284±0.00 0.230±0.00 0.383±0.21 0.269±0.00 0.063±0.00 0.415±0.07 N/A 0.271±0.00 N/A 0.202±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FM CIL_0002FM_0002 CGP 18:35452230-35711834

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005730 IDA nucleolus
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0031011 IEA:IDA Ino80 complex
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055719 ino80c INO80 complex subunit C protein_coding Danio_rerio

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