C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: thyroid hormone receptor interactor 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000153827 TRIP12 9606 - 2:229763838-229923239 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000283943 TRIP12-001 229763838-229922009 protein_coding
  ENST00000343290 TRIP12-014 229859376-229921994 protein_coding
  ENST00000389044 TRIP12-004 229767441-229921999 protein_coding
  ENST00000389045 TRIP12-005 229767441-229921903 protein_coding
  ENST00000409677 TRIP12-003 229831032-229921952 protein_coding
  ENST00000418123 TRIP12-016 229768616-229778465 protein_coding
  ENST00000428959 TRIP12-008 229859226-229921358 protein_coding
  ENST00000430954 TRIP12-007 229859228-229921662 protein_coding
  ENST00000435716 TRIP12-006 229859211-229923239 protein_coding
  ENST00000453485 TRIP12-009 229836863-229859282 protein_coding
  ENST00000459841 TRIP12-015 229773561-229778575 retained_intron
  ENST00000461189 TRIP12-012 229794861-229796732 retained_intron
  ENST00000470302 TRIP12-017 229791788-229793107 retained_intron
  ENST00000477441 TRIP12-010 229810957-229814493 retained_intron
  ENST00000479037 TRIP12-002 229807319-229922009 retained_intron
  ENST00000487178 TRIP12-011 229802251-229806149 retained_intron
  ENST00000495322 TRIP12-013 229791974-229793368 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000283943ENST00000389044ENST00000389045ENST00000418123ENST00000479037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000283943 5.347±0.00 N/A 1.114±0.00 2.308±0.00 3.165±0.64 3.158±0.00 4.704±0.00 3.591±1.20 1.483±0.00 5.066±0.00 1.984±0.00 3.517±0.02 4.600±0.00 13.044±0.00
ENST00000389044 4.511±0.00 4.968±0.00 N/A 4.536±1.00 4.202±0.00 3.652±0.00 5.126±0.00 N/A 4.883±0.00 5.761±0.00 7.701±0.00 2.856±0.44 4.230±0.35 24.066±0.00
ENST00000389045 15.074±0.00 7.327±0.00 3.369±0.00 4.310±0.35 8.751±2.17 8.469±2.61 7.523±2.72 12.591±0.00 6.257±2.73 12.375±0.57 8.460±1.96 4.743±0.99 5.221±0.63 34.715±11.73
ENST00000418123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 34.457±0.00 41.642±0.00 191.930±0.00
ENST00000479037 N/A N/A 5.701±0.00 N/A N/A 5.416±0.00 N/A N/A N/A 11.775±0.00 3.489±0.00 7.978±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087W CIL_00087W_0001 VISTA 2:229259676-229860905
CIL_00076T CIL_00076T_0001 CGP 2:229357629-229923239
CIL_00076Q CIL_00076Q_0001 CGP 2:229763838-230013109

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IBA:IEA ubiquitin-protein transferase activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IBA cytoplasm
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0009790 ISS embryo development
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0046966 IDA thyroid hormone receptor binding
GO:1901315 IMP negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 IMP negative regulation of double-strand break repair

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061397 trip12 thyroid hormone receptor interactor 12 protein_coding Danio_rerio
ENSMUSG00000026219 Trip12 thyroid hormone receptor interactor 12 protein_coding Mus_musculus

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