C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor interactor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389044 TRIP12-004 ENSG00000153827 9606 - 2:229767441-229921999 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000389044
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000389044 4.511±0.00 4.968±0.00 4.536±1.00 4.202±0.00 3.652±0.00 5.126±0.00 4.883±0.00 5.761±0.00 7.701±0.00 2.856±0.44 4.230±0.35 24.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087W CIL_00087W_0001 VISTA 2:229259676-229860905
CIL_00076T CIL_00076T_0001 CGP 2:229357629-229923239
CIL_00076Q CIL_00076Q_0001 CGP 2:229763838-230013109

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IBA:IEA ubiquitin-protein transferase activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005654 IDA nucleoplasm
GO:0005737 IBA cytoplasm
GO:0006281 IEA DNA repair
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0009790 ISS embryo development
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0046966 IDA thyroid hormone receptor binding
GO:1901315 IMP negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 IMP negative regulation of double-strand break repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000186648 Trip12-006 protein_coding Mus_musculus 0 8482
ENSMUST00000027421 Trip12-201 protein_coding Mus_musculus 0 5276
ENSMUST00000186465 Trip12-001 protein_coding Mus_musculus 0 5276
ENSMUST00000189670 Trip12-013 protein_coding Mus_musculus 0 3576
ENSMUST00000186894 Trip12-004 protein_coding Mus_musculus 0 3326
ENSMUST00000119013 Gm15425-001 processed_pseudogene Mus_musculus 0 2682
ENSMUST00000189496 Trip12-005 protein_coding Mus_musculus 0 2145
ENSMUST00000185909 Trip12-003 nonsense_mediated_decay Mus_musculus 0 1779
ENSMUST00000187733 Trip12-014 nonsense_mediated_decay Mus_musculus 0 1057
ENSMUST00000190125 Trip12-016 retained_intron Mus_musculus 0 512
ENSMUST00000190067 Trip12-002 protein_coding Mus_musculus 0 492
ENSMUST00000190464 Trip12-018 protein_coding Mus_musculus 0 490
ENSMUST00000185720 Trip12-009 retained_intron Mus_musculus 0 475
ENSMUST00000185567 Trip12-007 retained_intron Mus_musculus 0 468
ENSMUST00000189841 Trip12-017 nonsense_mediated_decay Mus_musculus 0 453
ENSMUST00000187818 Trip12-011 protein_coding Mus_musculus 0 274
ENSMUST00000190474 Trip12-010 retained_intron Mus_musculus 0 209
ENSDART00000145863 trip12-001 protein_coding Danio_rerio 0 202
ENSDART00000138552 trip12-002 protein_coding Danio_rerio 0 196

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