C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PDZ and LIM domain 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154553 PDLIM3 9606 - 4:185500660-185535612 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000284767 PDLIM3-201 185500660-185535558 protein_coding
  ENST00000284770 PDLIM3-001 185501697-185535508 protein_coding
  ENST00000284771 PDLIM3-002 185501751-185535612 protein_coding
  ENST00000504011 PDLIM3-003 185512094-185535491 retained_intron
  ENST00000504355 PDLIM3-008 185514146-185535507 retained_intron
  ENST00000505886 PDLIM3-006 185504545-185535466 nonsense_mediated_decay
  ENST00000512293 PDLIM3-005 185508301-185535507 nonsense_mediated_decay
  ENST00000512380 PDLIM3-010 185514315-185525122 retained_intron
  ENST00000514142 PDLIM3-004 185501751-185517717 retained_intron
  ENST00000514308 PDLIM3-011 185502256-185507087 retained_intron
  ENST00000515261 PDLIM3-007 185523143-185535507 retained_intron
  ENST00000620787 PDLIM3-202 185500660-185535558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000284770ENST00000284771ENST00000504011ENST00000505886ENST00000514142ENST00000514308ENST00000515261ENST00000620787
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000284770 N/A N/A N/A N/A 27.869±0.00 N/A 9.733±0.00 N/A 0.209±0.00 N/A 519.524±163.06 N/A N/A 15.828±0.00
ENST00000284771 7.429±0.00 12.821±0.00 N/A 2.340±1.75 13.106±6.01 28.628±17.69 17.066±12.98 6.896±0.00 13.275±12.15 22.914±17.93 N/A 23.412±13.50 12.461±9.06 40.245±39.05
ENST00000504011 0.963±0.00 N/A N/A 0.455±0.00 3.981±0.00 1.154±0.00 5.794±0.00 N/A 0.156±0.00 1.309±0.00 63.682±0.00 2.989±1.17 0.457±0.00 0.459±0.00
ENST00000505886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.402±0.00 3.302±0.00
ENST00000514142 N/A N/A 0.407±0.00 N/A 3.490±0.70 1.049±0.00 N/A 0.263±0.12 N/A 1.813±0.00 N/A 1.909±0.90 N/A N/A
ENST00000514308 N/A N/A N/A 2.345±0.00 N/A N/A N/A N/A N/A N/A N/A 6.260±0.00 2.098±0.00 3.484±0.00
ENST00000515261 N/A N/A 2.152±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620787 N/A N/A N/A N/A N/A N/A N/A N/A 0.131±0.00 N/A N/A 5.531±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H0 CIL_0000H0_0003 CGP 4:185500660-185956652

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0007015 IEA actin filament organization
GO:0007507 IEA heart development
GO:0008092 IEA cytoskeletal protein binding
GO:0008270 IEA zinc ion binding
GO:0008307 IEA structural constituent of muscle
GO:0015629 IEA actin cytoskeleton

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011023 pdlim3a PDZ and LIM domain 3a protein_coding Danio_rerio
ENSDARG00000014248 pdlim3b PDZ and LIM domain 3b protein_coding Danio_rerio
ENSMUSG00000031636 Pdlim3 PDZ and LIM domain 3 protein_coding Mus_musculus

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