C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase short-chain family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000154930 ACSS1 9606 - 20:25006230-25058980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323482 ACSS1-001 25006232-25058182 protein_coding
  ENST00000376726 ACSS1-002 25045938-25058980 protein_coding
  ENST00000432802 ACSS1-201 25006230-25058182 protein_coding
  ENST00000484396 ACSS1-003 25006232-25012326 processed_transcript
  ENST00000537502 ACSS1-202 25006230-25032706 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323482ENST00000432802ENST00000484396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323482 2.352±0.00 2.114±0.00 4.257±0.00 3.712±1.78 3.545±1.36 5.832±4.09 12.187±8.54 6.883±6.34 3.362±1.43 4.153±1.80 3.219±1.75 9.685±4.06 73.247±20.39 10.042±2.26
ENST00000432802 N/A 2.842±0.00 N/A N/A N/A 2.240±1.71 1.134±0.00 4.337±3.95 N/A N/A 1.235±0.00 12.423±4.41 25.580±0.00 7.777±1.81
ENST00000484396 N/A 0.918±0.00 0.625±0.00 0.777±0.37 N/A 0.301±0.00 N/A N/A 0.166±0.00 0.482±0.01 N/A 1.471±0.83 N/A 1.671±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023H CIL_00023H_0001 CGP 20:24962925-25058980
CIL_00023G CIL_00023G_0001 CGP 20:25006230-25082365

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003987 IDA:IEA acetate-CoA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0006069 TAS ethanol oxidation
GO:0006085 IDA acetyl-CoA biosynthetic process
GO:0006805 TAS xenobiotic metabolic process
GO:0008152 IEA metabolic process
GO:0016208 IEA AMP binding
GO:0019413 IEA acetate biosynthetic process
GO:0019427 IEA acetyl-CoA biosynthetic process from acetate
GO:0019542 IEA propionate biosynthetic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044142 acss1 acyl-CoA synthetase short-chain family member 1 protein_coding Danio_rerio
ENSMUSG00000027452 Acss1 acyl-CoA synthetase short-chain family member 1 protein_coding Mus_musculus

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