C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: acyl-CoA synthetase short-chain family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027452 Acss1 10090 - 2:150618105-150668500 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028944 Acss1-001 150618105-150668258 protein_coding
  ENSMUST00000141500 Acss1-002 150637980-150668500 processed_transcript
  ENSMUST00000141785 Acss1-003 150659605-150668214 retained_intron
  ENSMUST00000147135 Acss1-004 150628582-150638113 processed_transcript
  ENSMUST00000154328 Acss1-005 150628502-150638115 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028944ENSMUST00000141500ENSMUST00000141785ENSMUST00000147135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028944 6.021±1.14 4.893±1.22 2.895±0.17 6.660±2.18 9.543±2.65 27.225±1.84 90.655±7.06 131.450±13.04 15.477±14.57 20.967±2.03 7.239±1.34 7.681±2.15 6.280±6.86 3.882±0.99
ENSMUST00000141500 N/A N/A N/A N/A N/A N/A N/A N/A 0.162±0.06 N/A N/A N/A N/A N/A
ENSMUST00000141785 N/A 15.944±5.94 N/A N/A 17.428±0.83 42.897±4.85 N/A N/A 0.111±0.06 25.395±0.09 N/A 16.772±7.18 N/A N/A
ENSMUST00000147135 N/A N/A N/A N/A 33.735±4.22 N/A N/A N/A 0.337±0.17 N/A N/A 22.895±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023H CIL_00023H_0002 CGP 2:150583080-150668500
CIL_00023G CIL_00023G_0002 CGP 2:150618105-150689360

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003987 ISS acetate-CoA ligase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005759 ISS mitochondrial matrix
GO:0006085 ISS acetyl-CoA biosynthetic process
GO:0016208 IEA AMP binding
GO:0019413 IEA acetate biosynthetic process
GO:0019427 IEA acetyl-CoA biosynthetic process from acetate
GO:0019542 IEA propionate biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044142 acss1 acyl-CoA synthetase short-chain family member 1 protein_coding Danio_rerio
ENSG00000154930 ACSS1 acyl-CoA synthetase short-chain family member 1 protein_coding Homo_sapiens

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