C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: acyl-CoA synthetase short-chain family member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000323482 ACSS1-001 ENSG00000154930 9606 - 20:25006232-25058182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000323482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000323482 2.352±0.00 2.114±0.00 4.257±0.00 3.712±1.78 3.545±1.36 5.832±4.09 12.187±8.54 6.883±6.34 3.362±1.43 4.153±1.80 3.219±1.75 9.685±4.06 73.247±20.39 10.042±2.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00023H CIL_00023H_0001 CGP 20:24962925-25058980
CIL_00023G CIL_00023G_0001 CGP 20:25006230-25082365

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0003987 IDA:IEA acetate-CoA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005739 IEA mitochondrion
GO:0005759 IDA mitochondrial matrix
GO:0006069 TAS ethanol oxidation
GO:0006085 IDA acetyl-CoA biosynthetic process
GO:0006805 TAS xenobiotic metabolic process
GO:0008152 IEA metabolic process
GO:0016208 IEA AMP binding
GO:0019413 IEA acetate biosynthetic process
GO:0019427 IEA acetyl-CoA biosynthetic process from acetate
GO:0019542 IEA propionate biosynthetic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028944 Acss1-001 protein_coding Mus_musculus 0 1997
ENSMUST00000141500 Acss1-002 processed_transcript Mus_musculus 0 592
ENSMUST00000141785 Acss1-003 retained_intron Mus_musculus 0 311

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