C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nucleoporin 205kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155561 NUP205 9606 + 7:135557919-135648757 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000285968 NUP205-001 135557919-135648757 protein_coding
  ENST00000461255 NUP205-008 135635315-135648757 retained_intron
  ENST00000462316 NUP205-011 135597239-135601450 retained_intron
  ENST00000463247 NUP205-012 135606871-135616701 nonsense_mediated_decay
  ENST00000472132 NUP205-015 135606149-135615997 protein_coding
  ENST00000477620 NUP205-007 135619814-135648724 nonsense_mediated_decay
  ENST00000489493 NUP205-010 135557932-135573777 processed_transcript
  ENST00000490439 NUP205-013 135644899-135648725 nonsense_mediated_decay
  ENST00000491089 NUP205-014 135646025-135648749 retained_intron
  ENST00000607647 NUP205-016 135597740-135648757 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285968ENST00000461255ENST00000472132ENST00000477620ENST00000607647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285968 3.532±0.00 2.925±0.00 0.572±0.00 1.108±0.22 1.583±0.00 2.664±0.07 0.903±0.05 2.321±0.67 1.232±0.67 2.133±0.65 1.395±0.83 5.278±1.83 3.539±0.08 3.100±0.74
ENST00000461255 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.841±0.00 3.582±0.00 3.854±0.06 N/A
ENST00000472132 N/A N/A 4.832±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477620 2.644±0.00 6.613±0.00 N/A 2.442±0.00 3.186±0.00 2.708±0.00 1.323±0.00 5.162±0.00 1.955±0.00 3.513±0.00 1.732±0.00 3.882±0.00 N/A 6.587±0.00
ENST00000607647 N/A N/A 0.406±0.00 N/A 1.157±0.00 1.241±0.00 N/A N/A N/A 1.340±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0001 CGP 7:135361795-135648757
CIL_00082N CIL_00082N_0001 VISTA 7:135472160-136074488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000059 TAS protein import into nucleus, docking
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005635 TAS nuclear envelope
GO:0005643 IDA:IEA nuclear pore
GO:0005975 TAS carbohydrate metabolic process
GO:0006913 TAS nucleocytoplasmic transport
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0017056 IMP structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0034399 IDA nuclear periphery
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042530 nup205 nucleoporin 205 protein_coding Danio_rerio
ENSMUSG00000038759 Nup205 nucleoporin 205 protein_coding Mus_musculus

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