C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 205kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000285968 NUP205-001 ENSG00000155561 9606 + 7:135557919-135648757 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000285968
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000285968 3.532±0.00 2.925±0.00 0.572±0.00 1.108±0.22 1.583±0.00 2.664±0.07 0.903±0.05 2.321±0.67 1.232±0.67 2.133±0.65 1.395±0.83 5.278±1.83 3.539±0.08 3.100±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002H2 CIL_0002H2_0001 CGP 7:135361795-135648757
CIL_00082N CIL_00082N_0001 VISTA 7:135472160-136074488

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000059 TAS protein import into nucleus, docking
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005635 TAS nuclear envelope
GO:0005643 IDA:IEA nuclear pore
GO:0005975 TAS carbohydrate metabolic process
GO:0006913 TAS nucleocytoplasmic transport
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015758 TAS glucose transport
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0017056 IMP structural constituent of nuclear pore
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031965 IDA nuclear membrane
GO:0034399 IDA nuclear periphery
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0051292 IMP nuclear pore complex assembly
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043815 Nup205-201 protein_coding Mus_musculus 0 7020
ENSMUST00000170234 Nup205-202 protein_coding Mus_musculus 0 1223

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