C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger with KRAB and SCAN domains 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155592 ZKSCAN2 9606 - 16:25236001-25257931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328086 ZKSCAN2-001 25236001-25257931 protein_coding
  ENST00000565590 ZKSCAN2-003 25246271-25257534 retained_intron
  ENST00000569150 ZKSCAN2-002 25239494-25257557 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328086ENST00000565590ENST00000569150
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328086 0.622±0.00 1.054±0.00 0.343±0.00 0.985±0.11 0.668±0.27 0.356±0.00 0.850±0.00 0.404±0.25 0.606±0.22 0.448±0.05 0.760±0.45 0.863±0.42 0.855±0.32 3.664±0.63
ENST00000565590 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A
ENST00000569150 N/A N/A N/A N/A N/A 0.343±0.00 0.101±0.00 0.395±0.00 0.282±0.00 N/A 0.184±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KP CIL_0005KP_0001 CGP 16:25215731-25257931
CIL_0003X1 CIL_0003X1_0001 CGP 16:25236001-26137688

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IBA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094859 si:dkey-11o15.10 si:dkey-11o15.10 protein_coding Danio_rerio
ENSDARG00000097059 si:dkey-159n16.4 si:dkey-159n16.4 protein_coding Danio_rerio
ENSDARG00000097776 protein_coding Danio_rerio
ENSMUSG00000030757 Zkscan2 zinc finger with KRAB and SCAN domains 2 protein_coding Mus_musculus

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