C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003X1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000155592-ENSG00000182601 CGP 9606 16:25236001-26137688
GeneTranscriptPositionBiotype
ENSG00000155592 (ZKSCAN2)
zinc finger with KRAB and SCAN domains 2 		ENST00000328086 (ZKSCAN2-001) 25236001-25257931 protein_coding
ENST00000565590 (ZKSCAN2-003) 25246271-25257534 retained_intron
ENST00000569150 (ZKSCAN2-002) 25239494-25257557 nonsense_mediated_decay
ENSG00000182601 (HS3ST4)
heparan sulfate (glucosamine) 3-O-sulfotransferase 4 		ENST00000331351 (HS3ST4-001) 25692026-26137688 protein_coding
ENST00000475436 (HS3ST4-002) 25886746-26136207 processed_transcript
ENSG00000230330 (HMGN2P3)
high mobility group nucleosomal binding domain 2 pseudogene 3 		ENST00000433603 (HMGN2P3-001) 26032539-26032811 processed_pseudogene
ENSG00000237140 (HSPE1P16)
heat shock 10kDa protein 1 pseudogene 16 		ENST00000426640 (HSPE1P16-001) 26062750-26063097 processed_pseudogene
ENSG00000259955 (CTD-2547G23.2)
 ENST00000569456 (CTD-2547G23.2-001) 25238318-25239287 antisense
ENSG00000260255 (RP11-185O21.1)
 ENST00000564266 (RP11-185O21.1-001) 25824710-25826330 processed_pseudogene
ENSG00000260690 (CYCSP39)
cytochrome c, somatic pseudogene 39 		ENST00000565821 (CYCSP39-001) 25454339-25454647 processed_pseudogene
ENSG00000261636 (CTA-249B10.1)
 ENST00000568036 (CTA-249B10.1-001) 25419814-25424169 lincRNA
ENSG00000274925 (CTD-2547G23.4)
 ENST00000612792 (CTD-2547G23.4-001) 25257952-25261066 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003X1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030757-ENSMUSG00000078591 CGP 10090 7:123479516-124398989
GeneTranscriptPositionBiotype
ENSMUSG00000030757 (Zkscan2)
zinc finger with KRAB and SCAN domains 2 		ENSMUST00000042470 (Zkscan2-001) 123479516-123500449 protein_coding
ENSMUST00000125356 (Zkscan2-003) 123480142-123484977 protein_coding
ENSMUST00000128217 (Zkscan2-002) 123494214-123500449 protein_coding
ENSMUSG00000078591 (Hs3st4)
heparan sulfate (glucosamine) 3-O-sulfotransferase 4 		ENSMUST00000106437 (Hs3st4-001) 123982869-124398989 protein_coding
ENSMUSG00000085899 (Gm15338)
predicted gene 15338 		ENSMUST00000151884 (Gm15338-001) 124186718-124290270 sense_intronic
ENSMUSG00000098129 (Gm27040)
predicted gene, 27040 		ENSMUST00000181984 (Gm27040-001) 123971046-123983454 antisense
ENSMUSG00000098160 (Gm26974)
predicted gene, 26974 		ENSMUST00000182054 (Gm26974-002) 123966398-123968381 lincRNA
ENSMUST00000183263 (Gm26974-001) 123958955-123968767 lincRNA

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003X1_0001ENSG00000155592ENST00000328086ENST00000565590ENST00000569150ENSG00000182601ENST00000331351ENST00000475436ENSG00000230330ENST00000433603ENSG00000237140ENST00000426640ENSG00000259955ENST00000569456ENSG00000260255ENST00000564266ENSG00000260690ENST00000565821ENSG00000261636ENST00000568036ENSG00000274925ENST00000612792CIL_0003X1_0002ENSMUSG00000030757ENSMUST00000042470ENSMUST00000125356ENSMUST00000128217ENSMUSG00000078591ENSMUST00000106437ENSMUSG00000085899ENSMUST00000151884ENSMUSG00000098129ENSMUST00000181984ENSMUSG00000098160ENSMUST00000182054ENSMUST00000183263
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003X1_0001ENSG00000155592ENST00000328086ENST00000565590ENST00000569150ENSG00000182601ENST00000331351ENST00000475436ENSG00000230330ENST00000433603ENSG00000237140ENST00000426640ENSG00000259955ENST00000569456ENSG00000260255ENST00000564266ENSG00000260690ENST00000565821ENSG00000261636ENST00000568036ENSG00000274925ENST00000612792CIL_0003X1_0002ENSMUSG00000030757ENSMUST00000042470ENSMUST00000125356ENSMUST00000128217ENSMUSG00000078591ENSMUST00000106437ENSMUSG00000085899ENSMUST00000151884ENSMUSG00000098129ENSMUST00000181984ENSMUSG00000098160ENSMUST00000182054ENSMUST00000183263
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155592 ENST00000328086 0.622±0.00 1.054±0.00 0.343±0.00 0.985±0.11 0.668±0.27 0.356±0.00 0.850±0.00 0.404±0.25 0.606±0.22 0.448±0.05 0.760±0.45 0.863±0.42 0.855±0.32 3.664±0.63
ENST00000565590 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A
ENST00000569150 N/A N/A N/A N/A N/A 0.343±0.00 0.101±0.00 0.395±0.00 0.282±0.00 N/A 0.184±0.00 N/A N/A N/A
ENSG00000182601 ENST00000331351 N/A N/A N/A 7.829±6.85 0.457±0.00 0.025±0.00 N/A N/A N/A 0.012±0.00 N/A 0.023±0.01 0.022±0.00 0.379±0.09
ENST00000475436 N/A N/A N/A N/A N/A N/A N/A N/A 0.074±0.00 N/A 0.565±0.00 N/A N/A N/A
ENSG00000230330 ENST00000433603 0.066±0.00 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000237140 ENST00000426640 N/A N/A N/A 0.063±0.00 0.031±0.00 N/A N/A N/A N/A N/A 0.059±0.00 N/A N/A N/A
ENSG00000259955 ENST00000569456 N/A N/A 1.104±0.00 N/A N/A N/A N/A 1.321±0.00 N/A N/A 0.832±0.00 1.959±0.00 N/A N/A
ENSG00000260255 ENST00000564266 N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000260690 ENST00000565821 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A N/A
ENSG00000261636 ENST00000568036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.099±0.00
ENSG00000274925 ENST00000612792 0.180±0.00 1.064±0.00 0.165±0.00 0.365±0.23 0.437±0.05 0.333±0.14 0.201±0.12 0.613±0.43 0.147±0.00 0.415±0.25 0.109±0.02 0.624±0.24 0.128±0.05 0.916±0.43
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030757 ENSMUST00000042470 0.026±0.01 N/A N/A 2.592±0.34 N/A 0.024±0.00 0.026±0.00 0.040±0.02 N/A 0.012±0.00 0.030±0.00 0.192±0.17 0.149±0.08 0.849±0.00
ENSMUST00000125356 N/A N/A N/A N/A N/A N/A 0.048±0.00 0.151±0.00 N/A N/A 0.051±0.00 N/A N/A N/A
ENSMUST00000128217 0.082±0.00 N/A N/A N/A 0.037±0.02 0.074±0.05 0.018±0.01 0.025±0.02 0.029±0.01 0.022±0.00 0.020±0.00 0.112±0.00 0.049±0.00 N/A
ENSMUSG00000078591 ENSMUST00000106437 0.056±0.02 0.030±0.01 0.009±0.00 7.468±4.01 0.033±0.00 0.033±0.02 0.024±0.01 0.011±0.00 0.007±0.01 0.022±0.01 0.019±0.00 0.038±0.02 0.033±0.02 0.696±0.00
ENSMUSG00000085899 ENSMUST00000151884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.328±0.00
ENSMUSG00000098129 ENSMUST00000181984 N/A N/A N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098160 ENSMUST00000182054 N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A N/A 0.039±0.00
ENSMUST00000183263 N/A N/A N/A 0.101±0.00 N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A 0.145±0.00

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