C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 237
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000155755 TMEM237 9606 - 2:201620184-201643570 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286196 TMEM237-008 201623756-201643484 nonsense_mediated_decay
  ENST00000409444 TMEM237-002 201620184-201642944 protein_coding
  ENST00000409883 TMEM237-001 201620184-201643517 protein_coding
  ENST00000432684 TMEM237-003 201629288-201643570 nonsense_mediated_decay
  ENST00000444047 TMEM237-012 201629730-201643402 nonsense_mediated_decay
  ENST00000463205 TMEM237-010 201638451-201642653 retained_intron
  ENST00000466641 TMEM237-006 201627360-201633403 processed_transcript
  ENST00000466839 TMEM237-013 201627387-201631375 processed_transcript
  ENST00000471318 TMEM237-016 201623882-201629420 processed_transcript
  ENST00000480124 TMEM237-014 201636170-201639031 retained_intron
  ENST00000489550 TMEM237-011 201632149-201643418 processed_transcript
  ENST00000495329 TMEM237-007 201620186-201626323 retained_intron
  ENST00000621467 TMEM237-201 201623700-201642692 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286196ENST00000409444ENST00000409883ENST00000432684ENST00000466641ENST00000471318ENST00000489550ENST00000495329ENST00000621467
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286196 0.814±0.00 1.161±0.00 N/A N/A 2.605±0.00 0.967±0.55 1.439±0.76 2.021±0.00 0.389±0.00 1.949±0.00 2.864±0.00 2.972±1.43 1.854±0.41 2.416±0.08
ENST00000409444 0.597±0.00 0.627±0.00 0.876±0.00 2.472±0.47 0.872±0.27 N/A 0.423±0.08 0.393±0.00 0.795±0.00 N/A 1.013±0.00 1.180±0.89 0.191±0.02 0.607±0.07
ENST00000409883 N/A 0.722±0.00 N/A 1.814±0.00 0.935±0.00 0.472±0.16 0.627±0.00 0.675±0.00 0.125±0.00 0.500±0.00 1.026±0.00 1.816±0.87 0.340±0.12 N/A
ENST00000432684 1.633±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.458±0.00 N/A N/A N/A
ENST00000466641 N/A N/A N/A N/A N/A 2.752±0.00 2.760±0.00 N/A N/A N/A N/A 12.846±0.00 6.302±4.53 8.218±3.99
ENST00000471318 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.279±0.00 N/A N/A N/A N/A
ENST00000489550 N/A N/A N/A N/A N/A N/A N/A 1.217±0.00 N/A N/A N/A N/A N/A 5.596±0.00
ENST00000495329 N/A 0.546±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621467 0.798±0.00 N/A N/A N/A N/A N/A N/A N/A 0.511±0.00 N/A N/A N/A 0.866±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089O CIL_00089O_0001 VISTA 2:201132231-201734391
CIL_00020P CIL_00020P_0001 CGP 2:201487425-201643570
CIL_0009CR CIL_0009CR_0001 VISTA 2:201587932-202188948
CIL_00020O CIL_00020O_0001 CGP 2:201620184-201698694

Gene Ontology
GO IDEvidence TypeGO Description
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0030111 IMP regulation of Wnt signaling pathway
GO:0035869 IDA ciliary transition zone
GO:0042384 IMP cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041735 tmem237a transmembrane protein 237a protein_coding Danio_rerio
ENSDARG00000074248 tmem237b transmembrane protein 237b protein_coding Danio_rerio
ENSMUSG00000038079 Tmem237 transmembrane protein 237 protein_coding Mus_musculus

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