C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetraspanin 7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156298 TSPAN7 9606 + X:38561370-38688920 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000286824 TSPAN7-005 38561544-38688397 protein_coding
  ENST00000378482 TSPAN7-001 38561370-38688913 protein_coding
  ENST00000419600 TSPAN7-006 38666096-38688920 retained_intron
  ENST00000471410 TSPAN7-003 38561542-38688168 nonsense_mediated_decay
  ENST00000475216 TSPAN7-004 38561544-38688271 nonsense_mediated_decay
  ENST00000480976 TSPAN7-008 38561544-38674265 nonsense_mediated_decay
  ENST00000488893 TSPAN7-002 38570683-38675816 processed_transcript
  ENST00000494037 TSPAN7-009 38612322-38671416 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286824ENST00000378482ENST00000419600ENST00000488893
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286824 18.909±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378482 26.551±0.00 25.944±0.00 4.657±0.00 126.439±38.54 16.835±0.00 23.050±16.87 15.760±0.00 10.302±5.83 3.393±1.05 23.128±19.72 27.035±22.45 9.910±6.62 19.613±0.18 9.092±6.42
ENST00000419600 N/A 22.452±0.00 N/A 81.578±0.00 5.168±2.49 N/A N/A 4.697±0.00 4.351±0.00 N/A 10.508±5.54 6.109±0.00 N/A 3.473±0.00
ENST00000488893 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.889±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QH CIL_0005QH_0001 CGP X:38352545-38688920
CIL_0005QI CIL_0005QI_0001 CGP X:38561370-38806537

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005887 TAS integral component of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008407 tspan7b tetraspanin 7b protein_coding Danio_rerio
ENSMUSG00000058254 Tspan7 tetraspanin 7 protein_coding Mus_musculus

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