C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378482 TSPAN7-001 ENSG00000156298 9606 + X:38561370-38688913 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378482
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378482 26.551±0.00 25.944±0.00 4.657±0.00 126.439±38.54 16.835±0.00 23.050±16.87 15.760±0.00 10.302±5.83 3.393±1.05 23.128±19.72 27.035±22.45 9.910±6.62 19.613±0.18 9.092±6.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005QH CIL_0005QH_0001 CGP X:38352545-38688920
CIL_0005QI CIL_0005QI_0001 CGP X:38561370-38806537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 TAS integral component of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076354 Tspan7-001 protein_coding Mus_musculus 0 1535
ENSMUST00000149982 Tspan7-003 retained_intron Mus_musculus 0 1003
ENSMUST00000115526 Tspan7-002 protein_coding Mus_musculus 0 1003
ENSDART00000016002 tspan7-001 protein_coding Danio_rerio 7e-32 143

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