C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005QI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000156298-ENSG00000165175 CGP 9606 X:38561370-38806537
GeneTranscriptPositionBiotype
ENSG00000156298 (TSPAN7)
tetraspanin 7 		ENST00000286824 (TSPAN7-005) 38561544-38688397 protein_coding
ENST00000378482 (TSPAN7-001) 38561370-38688913 protein_coding
ENST00000419600 (TSPAN7-006) 38666096-38688920 retained_intron
ENST00000471410 (TSPAN7-003) 38561542-38688168 nonsense_mediated_decay
ENST00000475216 (TSPAN7-004) 38561544-38688271 nonsense_mediated_decay
ENST00000480976 (TSPAN7-008) 38561544-38674265 nonsense_mediated_decay
ENST00000488893 (TSPAN7-002) 38570683-38675816 processed_transcript
ENST00000494037 (TSPAN7-009) 38612322-38671416 processed_transcript
ENSG00000165175 (MID1IP1)
MID1 interacting protein 1 		ENST00000336949 (MID1IP1-001) 38803733-38806537 protein_coding
ENST00000378474 (MID1IP1-002) 38801454-38806433 protein_coding
ENST00000457894 (MID1IP1-201) 38801432-38806528 protein_coding
ENST00000614558 (MID1IP1-202) 38801432-38806528 protein_coding
ENSG00000235806 (RP4-646N3.1)
 ENST00000432359 (RP4-646N3.1-001) 38770331-38799658 lincRNA
ENSG00000250349 (TM4SF2)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000417050}; cDNA FLJ59144, highly similar to Tetraspanin-7 {ECO:0000313|EMBL: 		ENST00000465127 (TM4SF2-001) 37349330-38687674 protein_coding
CIL_0005QI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000058254-ENSMUSG00000008035 CGP 10090 X:10485158-10719690
GeneTranscriptPositionBiotype
ENSMUSG00000008035 (Mid1ip1)
Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish)) 		ENSMUST00000008179 (Mid1ip1-002) 10717390-10719690 protein_coding
ENSMUST00000115524 (Mid1ip1-001) 10717390-10719690 protein_coding
ENSMUST00000125623 (Mid1ip1-005) 10715013-10716448 processed_transcript
ENSMUST00000144356 (Mid1ip1-004) 10715019-10718384 protein_coding
ENSMUST00000156321 (Mid1ip1-003) 10717468-10718384 protein_coding
ENSMUSG00000058254 (Tspan7)
tetraspanin 7 		ENSMUST00000076354 (Tspan7-001) 10485158-10596605 protein_coding
ENSMUST00000115526 (Tspan7-002) 10485158-10596605 protein_coding
ENSMUST00000149982 (Tspan7-003) 10485158-10596605 retained_intron
ENSMUSG00000068200 (Gm5931)
predicted pseudogene 5931 		ENSMUST00000121308 (Gm5931-001) 10660522-10660998 processed_pseudogene
ENSMUSG00000081308 (Gm14480)
predicted gene 14480 		ENSMUST00000118521 (Gm14480-001) 10696932-10697364 processed_pseudogene
ENSMUSG00000083262 (Gm14470)
predicted gene 14470 		ENSMUST00000119085 (Gm14470-001) 10680964-10681429 processed_pseudogene
ENSMUSG00000085587 (Gm14493)
predicted gene 14493 		ENSMUST00000141174 (Gm14493-001) 10717473-10718710 antisense
ENSMUSG00000088404 (Gm25885)
predicted gene, 25885 		ENSMUST00000157779 (Gm25885-201) 10510048-10510156 rRNA
ENSMUSG00000097444 (Gm10489)
predicted gene 10489 		ENSMUST00000180511 (Gm10489-201) 10707176-10717242 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QI_0001ENSG00000156298ENST00000286824ENST00000378482ENST00000419600ENST00000471410ENST00000475216ENST00000480976ENST00000488893ENST00000494037ENSG00000165175ENST00000336949ENST00000378474ENST00000457894ENST00000614558ENSG00000235806ENST00000432359ENSG00000250349ENST00000465127CIL_0005QI_0002ENSMUSG00000008035ENSMUST00000008179ENSMUST00000115524ENSMUST00000125623ENSMUST00000144356ENSMUST00000156321ENSMUSG00000058254ENSMUST00000076354ENSMUST00000115526ENSMUST00000149982ENSMUSG00000068200ENSMUST00000121308ENSMUSG00000081308ENSMUST00000118521ENSMUSG00000083262ENSMUST00000119085ENSMUSG00000085587ENSMUST00000141174ENSMUSG00000088404ENSMUST00000157779ENSMUSG00000097444ENSMUST00000180511
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QI_0001ENSG00000156298ENST00000286824ENST00000378482ENST00000419600ENST00000488893ENSG00000165175ENST00000336949ENST00000378474ENST00000614558ENSG00000235806ENST00000432359ENSG00000250349ENST00000465127CIL_0005QI_0002ENSMUSG00000008035ENSMUST00000008179ENSMUST00000115524ENSMUST00000156321ENSMUSG00000058254ENSMUST00000076354ENSMUST00000115526ENSMUST00000149982ENSMUSG00000068200ENSMUST00000121308ENSMUSG00000081308ENSMUST00000118521ENSMUSG00000083262ENSMUST00000119085ENSMUSG00000085587ENSMUST00000141174ENSMUSG00000088404ENSMUST00000157779ENSMUSG00000097444ENSMUST00000180511
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000156298 ENST00000286824 18.909±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378482 26.551±0.00 25.944±0.00 4.657±0.00 126.439±38.54 16.835±0.00 23.050±16.87 15.760±0.00 10.302±5.83 3.393±1.05 23.128±19.72 27.035±22.45 9.910±6.62 19.613±0.18 9.092±6.42
ENST00000419600 N/A 22.452±0.00 N/A 81.578±0.00 5.168±2.49 N/A N/A 4.697±0.00 4.351±0.00 N/A 10.508±5.54 6.109±0.00 N/A 3.473±0.00
ENST00000471410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488893 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.889±0.00 N/A N/A N/A N/A
ENST00000494037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000165175 ENST00000336949 7.974±0.00 1.589±0.00 N/A 5.629±2.71 3.151±0.15 4.490±3.54 1.647±0.69 N/A 0.904±0.00 4.806±1.72 N/A 16.266±17.31 3.572±0.79 3.868±1.19
ENST00000378474 19.699±0.00 14.640±0.00 N/A 25.763±20.22 25.456±0.00 33.114±0.00 6.359±0.00 8.954±7.50 19.560±16.13 40.930±0.00 31.944±18.46 22.378±21.71 6.725±2.31 18.446±6.48
ENST00000457894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614558 1.916±0.00 1.133±0.00 1.512±0.00 2.115±0.62 1.443±0.74 2.306±0.84 0.606±0.44 2.344±0.90 0.881±0.00 N/A 7.077±0.00 3.378±1.12 1.640±0.68 0.998±0.00
ENSG00000235806 ENST00000432359 N/A N/A N/A 0.010±0.00 0.027±0.00 0.026±0.00 0.009±0.00 0.087±0.08 0.096±0.00 0.049±0.00 N/A 0.016±0.00 0.017±0.00 0.103±0.08
ENSG00000250349 ENST00000465127 N/A N/A N/A N/A N/A N/A N/A 3.803±0.00 N/A N/A N/A N/A 4.290±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008035 ENSMUST00000008179 11.209±0.93 5.286±0.55 15.938±0.39 8.791±0.71 8.420±1.85 6.982±1.07 13.198±1.51 6.170±0.74 8.380±1.88 25.071±1.06 13.726±5.68 17.443±6.55 1.936±0.92 2.228±0.93
ENSMUST00000115524 3.252±0.47 2.171±0.00 4.899±0.49 2.412±0.04 2.758±0.69 2.670±0.32 3.130±0.66 2.119±0.52 2.844±0.71 8.801±0.65 3.090±1.58 7.851±2.24 0.933±0.11 0.897±0.23
ENSMUST00000125623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144356 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156321 N/A 21.155±2.97 N/A N/A N/A 13.450±0.84 N/A N/A N/A N/A N/A 54.424±0.58 3.321±0.00 N/A
ENSMUSG00000058254 ENSMUST00000076354 63.777±25.17 31.545±6.59 47.212±3.67 189.319±166.24 48.783±5.67 54.356±2.16 58.612±9.88 41.923±1.71 19.461±6.61 400.724±65.56 40.845±1.91 21.501±4.43 11.579±6.69 1.528±0.62
ENSMUST00000115526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.02
ENSMUST00000149982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 0.025±0.00 0.057±0.05
ENSMUSG00000068200 ENSMUST00000121308 1.350±0.50 0.284±0.11 1.199±0.67 2.243±0.50 0.407±0.22 0.425±0.00 0.366±0.01 0.307±0.17 1.126±0.92 0.405±0.13 0.119±0.05 1.348±0.98 0.151±0.03 1.078±0.15
ENSMUSG00000081308 ENSMUST00000118521 N/A N/A 0.104±0.08 0.359±0.00 N/A N/A N/A N/A 0.034±0.02 N/A 0.113±0.02 0.382±0.08 0.106±0.07 0.138±0.00
ENSMUSG00000083262 ENSMUST00000119085 N/A N/A N/A 0.084±0.00 N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 0.097±0.00 N/A
ENSMUSG00000085587 ENSMUST00000141174 27.556±3.09 28.743±4.30 25.212±0.14 28.718±20.71 26.277±1.45 28.961±4.28 20.130±6.81 11.145±1.29 20.536±5.58 81.705±7.01 16.005±7.29 91.879±14.11 4.495±1.30 5.445±0.84
ENSMUSG00000088404 ENSMUST00000157779 N/A N/A N/A 18.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000097444 ENSMUST00000180511 0.059±0.04 0.101±0.00 0.100±0.00 0.036±0.01 0.062±0.04 0.337±0.23 0.065±0.02 0.047±0.03 0.078±0.03 0.122±0.06 0.037±0.02 0.185±0.13 0.010±0.01 0.042±0.02

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