C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005QH_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000036473-ENSG00000156298 CGP 9606 X:38352545-38688920
GeneTranscriptPositionBiotype
ENSG00000036473 (OTC)
ornithine carbamoyltransferase 		ENST00000039007 (OTC-001) 38352545-38421450 protein_coding
ENST00000488812 (OTC-002) 38352605-38403667 processed_transcript
ENSG00000156298 (TSPAN7)
tetraspanin 7 		ENST00000286824 (TSPAN7-005) 38561544-38688397 protein_coding
ENST00000378482 (TSPAN7-001) 38561370-38688913 protein_coding
ENST00000419600 (TSPAN7-006) 38666096-38688920 retained_intron
ENST00000471410 (TSPAN7-003) 38561542-38688168 nonsense_mediated_decay
ENST00000475216 (TSPAN7-004) 38561544-38688271 nonsense_mediated_decay
ENST00000480976 (TSPAN7-008) 38561544-38674265 nonsense_mediated_decay
ENST00000488893 (TSPAN7-002) 38570683-38675816 processed_transcript
ENST00000494037 (TSPAN7-009) 38612322-38671416 processed_transcript
ENSG00000229735 (FTLP16)
ferritin, light polypeptide pseudogene 16 		ENST00000446400 (FTLP16-001) 38484752-38485264 processed_pseudogene
ENSG00000233007 (UBTFL11)
upstream binding transcription factor, RNA polymerase I-like 11 (pseudogene) 		ENST00000428234 (UBTFL11-001) 38531923-38534174 processed_pseudogene
ENSG00000250349 (TM4SF2)
Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000417050}; cDNA FLJ59144, highly similar to Tetraspanin-7 {ECO:0000313|EMBL: 		ENST00000465127 (TM4SF2-001) 37349330-38687674 protein_coding
CIL_0005QH_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031173-ENSMUSG00000058254 CGP 10090 X:10252305-10596605
GeneTranscriptPositionBiotype
ENSMUSG00000031173 (Otc)
ornithine transcarbamylase 		ENSMUST00000049910 (Otc-001) 10252305-10321024 protein_coding
ENSMUST00000115528 (Otc-002) 10252367-10316864 protein_coding
ENSMUSG00000058254 (Tspan7)
tetraspanin 7 		ENSMUST00000076354 (Tspan7-001) 10485158-10596605 protein_coding
ENSMUST00000115526 (Tspan7-002) 10485158-10596605 protein_coding
ENSMUST00000149982 (Tspan7-003) 10485158-10596605 retained_intron
ENSMUSG00000086996 (4933416E14Rik)
RIKEN cDNA 4933416E14 gene 		ENSMUST00000130841 (4933416E14Rik-001) 10416643-10417133 transcribed_processed_pseudogene
ENSMUST00000137955 (4933416E14Rik-002) 10415301-10417238 processed_transcript
ENSMUSG00000088404 (Gm25885)
predicted gene, 25885 		ENSMUST00000157779 (Gm25885-201) 10510048-10510156 rRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QH_0001ENSG00000036473ENST00000039007ENST00000488812ENSG00000156298ENST00000286824ENST00000378482ENST00000419600ENST00000471410ENST00000475216ENST00000480976ENST00000488893ENST00000494037ENSG00000229735ENST00000446400ENSG00000233007ENST00000428234ENSG00000250349ENST00000465127CIL_0005QH_0002ENSMUSG00000031173ENSMUST00000049910ENSMUST00000115528ENSMUSG00000058254ENSMUST00000076354ENSMUST00000115526ENSMUST00000149982ENSMUSG00000086996ENSMUST00000130841ENSMUST00000137955ENSMUSG00000088404ENSMUST00000157779
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005QH_0001ENSG00000036473ENST00000039007ENST00000488812ENSG00000156298ENST00000286824ENST00000378482ENST00000419600ENST00000488893ENSG00000229735ENST00000446400ENSG00000233007ENST00000428234ENSG00000250349ENST00000465127CIL_0005QH_0002ENSMUSG00000031173ENSMUST00000049910ENSMUST00000115528ENSMUSG00000058254ENSMUST00000076354ENSMUST00000115526ENSMUST00000149982ENSMUSG00000086996ENSMUST00000130841ENSMUST00000137955ENSMUSG00000088404ENSMUST00000157779
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000036473 ENST00000039007 0.175±0.00 2.133±0.00 N/A N/A 0.022±0.00 0.555±0.04 0.042±0.00 11.558±11.54 1.583±1.53 0.039±0.00 N/A 0.090±0.00 0.032±0.02 0.213±0.00
ENST00000488812 N/A N/A N/A N/A 0.147±0.00 0.212±0.00 N/A 43.514±0.00 N/A 0.216±0.00 0.086±0.00 N/A N/A 0.175±0.00
ENSG00000156298 ENST00000286824 18.909±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000378482 26.551±0.00 25.944±0.00 4.657±0.00 126.439±38.54 16.835±0.00 23.050±16.87 15.760±0.00 10.302±5.83 3.393±1.05 23.128±19.72 27.035±22.45 9.910±6.62 19.613±0.18 9.092±6.42
ENST00000419600 N/A 22.452±0.00 N/A 81.578±0.00 5.168±2.49 N/A N/A 4.697±0.00 4.351±0.00 N/A 10.508±5.54 6.109±0.00 N/A 3.473±0.00
ENST00000471410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480976 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488893 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.889±0.00 N/A N/A N/A N/A
ENST00000494037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229735 ENST00000446400 N/A N/A N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000233007 ENST00000428234 N/A 0.067±0.00 N/A 0.019±0.00 0.006±0.00 0.006±0.00 0.025±0.02 0.030±0.00 N/A 0.029±0.00 N/A N/A N/A 0.037±0.00
ENSG00000250349 ENST00000465127 N/A N/A N/A N/A N/A N/A N/A 3.803±0.00 N/A N/A N/A N/A 4.290±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031173 ENSMUST00000049910 N/A N/A 0.005±0.00 0.008±0.00 0.334±0.18 2.077±0.41 0.025±0.01 N/A 59.011±61.56 0.146±0.08 0.030±0.01 0.098±0.05 0.530±0.62 N/A
ENSMUST00000115528 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.03 0.048±0.00 N/A
ENSMUSG00000058254 ENSMUST00000076354 63.777±25.17 31.545±6.59 47.212±3.67 189.319±166.24 48.783±5.67 54.356±2.16 58.612±9.88 41.923±1.71 19.461±6.61 400.724±65.56 40.845±1.91 21.501±4.43 11.579±6.69 1.528±0.62
ENSMUST00000115526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.111±0.02
ENSMUST00000149982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.230±0.00 0.025±0.00 0.057±0.05
ENSMUSG00000086996 ENSMUST00000130841 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.514±0.21
ENSMUST00000137955 N/A N/A 0.004±0.00 0.011±0.00 N/A N/A N/A N/A N/A N/A N/A 0.015±0.00 N/A 0.466±0.29
ENSMUSG00000088404 ENSMUST00000157779 N/A N/A N/A 18.130±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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