C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycomb group ring finger 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156374 PCGF6 9606 - 10:103302796-103351134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337211 PCGF6-003 103302796-103351079 protein_coding
  ENST00000369847 PCGF6-001 103302796-103351134 protein_coding
  ENST00000490296 PCGF6-002 103303127-103351081 processed_transcript
  ENST00000492755 PCGF6-006 103348355-103348939 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337211ENST00000369847ENST00000490296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337211 N/A N/A 0.372±0.00 0.602±0.00 0.991±0.33 0.586±0.00 0.747±0.00 0.656±0.00 N/A 0.851±0.00 1.804±0.00 2.563±0.00 0.990±0.72 4.065±0.00
ENST00000369847 2.930±0.00 3.835±0.00 0.185±0.00 0.675±0.27 1.267±0.61 0.716±0.56 0.994±0.47 0.909±0.45 1.652±0.00 0.444±0.00 1.139±0.00 3.417±1.31 1.787±0.11 5.319±1.49
ENST00000490296 1.212±0.00 N/A N/A 1.634±0.00 1.477±0.00 N/A N/A 0.570±0.00 0.639±0.00 0.802±0.00 0.968±0.00 N/A N/A 1.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HJ CIL_0001HJ_0002 CGP 10:103277163-103351134
CIL_00065U CIL_00065U_0001 CGP 10:103302796-103389065

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069681 pcgf6 polycomb group ring finger 6 protein_coding Danio_rerio
ENSMUSG00000025050 Pcgf6 polycomb group ring finger 6 protein_coding Mus_musculus

Loading