C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369847 PCGF6-001 ENSG00000156374 9606 - 10:103302796-103351134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369847
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369847 2.930±0.00 3.835±0.00 0.185±0.00 0.675±0.27 1.267±0.61 0.716±0.56 0.994±0.47 0.909±0.45 1.652±0.00 0.444±0.00 1.139±0.00 3.417±1.31 1.787±0.11 5.319±1.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HJ CIL_0001HJ_0002 CGP 10:103277163-103351134
CIL_00065U CIL_00065U_0001 CGP 10:103302796-103389065

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IEA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001227 IEA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031519 IDA PcG protein complex
GO:0035102 IDA PRC1 complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026032 Pcgf6-201 protein_coding Mus_musculus 0 1256

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