C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0001HJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000011862-ENSDARG00000069681 CGP 7955 13:28899288-28913319
GeneTranscriptPositionBiotype
ENSDARG00000011862 (inaa)
internexin neuronal intermediate filament protein, alpha a
ENSDART00000027213 (inaa-001) 28899288-28904638 protein_coding
ENSDARG00000069681 (pcgf6)
polycomb group ring finger 6
ENSDART00000101582 (pcgf6-001) 28906216-28913319 protein_coding
ENSDART00000133827 (pcgf6-002) 28910999-28911706 protein_coding
CIL_0001HJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148798-ENSG00000156374 CGP 9606 10:103277163-103351134
GeneTranscriptPositionBiotype
ENSG00000148798 (INA)
internexin neuronal intermediate filament protein, alpha
ENST00000369849 (INA-001) 103277163-103290351 protein_coding
ENST00000616853 (INA-201) 103277167-103290342 protein_coding
ENSG00000156374 (PCGF6)
polycomb group ring finger 6
ENST00000337211 (PCGF6-003) 103302796-103351079 protein_coding
ENST00000369847 (PCGF6-001) 103302796-103351134 protein_coding
ENST00000490296 (PCGF6-002) 103303127-103351081 processed_transcript
ENST00000492755 (PCGF6-006) 103348355-103348939 retained_intron
ENSG00000212413 (RNU11-3P)
RNA, U11 small nuclear 3, pseudogene
ENST00000391111 (RNU11-3P-201) 103312436-103312568 snRNA
CIL_0001HJ_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034336-ENSMUSG00000025050 CGP 10090 19:47014698-47050845
GeneTranscriptPositionBiotype
ENSMUSG00000025041 (Nt5c2)
5'-nucleotidase, cytosolic II
ENSMUST00000086961 (Nt5c2-201) 46886831-46969474 protein_coding
ENSMUST00000168536 (Nt5c2-202) 46886831-46962351 protein_coding
ENSMUST00000172239 (Nt5c2-001) 46887828-47015153 protein_coding
ENSMUST00000174731 (Nt5c2-002) 46891509-46898669 nonsense_mediated_decay
ENSMUSG00000025050 (Pcgf6)
polycomb group ring finger 6
ENSMUST00000026032 (Pcgf6-201) 47033619-47050845 protein_coding
ENSMUSG00000034336 (Ina)
internexin neuronal intermediate filament protein, alpha
ENSMUST00000037636 (Ina-001) 47014698-47025327 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HJ_0001ENSDARG00000011862ENSDART00000027213ENSDARG00000069681ENSDART00000101582ENSDART00000133827CIL_0001HJ_0002ENSG00000148798ENST00000369849ENST00000616853ENSG00000156374ENST00000337211ENST00000369847ENST00000490296ENST00000492755ENSG00000212413ENST00000391111CIL_0001HJ_0003ENSMUSG00000025041ENSMUST00000086961ENSMUST00000168536ENSMUST00000172239ENSMUST00000174731ENSMUSG00000025050ENSMUST00000026032ENSMUSG00000034336ENSMUST00000037636
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HJ_0001ENSDARG00000011862ENSDART00000027213ENSDARG00000069681ENSDART00000101582CIL_0001HJ_0002ENSG00000148798ENST00000369849ENST00000616853ENSG00000156374ENST00000337211ENST00000369847ENST00000490296ENSG00000212413ENST00000391111CIL_0001HJ_0003ENSMUSG00000025041ENSMUST00000086961ENSMUST00000168536ENSMUST00000172239ENSMUST00000174731ENSMUSG00000025050ENSMUST00000026032ENSMUSG00000034336ENSMUST00000037636
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011862 ENSDART00000027213 N/A N/A N/A 6.756±4.26 N/A N/A 0.800±0.88 1.775±1.07 0.023±0.00 N/A 0.174±0.00 N/A N/A N/A
ENSDARG00000069681 ENSDART00000101582 N/A N/A N/A 0.678±0.16 N/A N/A 2.349±1.57 8.722±3.91 1.431±0.00 N/A 0.523±0.00 N/A N/A N/A
ENSDART00000133827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148798 ENST00000369849 N/A N/A 0.040±0.00 33.007±0.00 N/A 0.146±0.00 0.008±0.00 0.013±0.00 0.174±0.00 0.042±0.00 N/A 0.033±0.03 0.114±0.00 0.899±0.00
ENST00000616853 N/A 0.028±0.00 0.040±0.00 69.307±0.00 0.177±0.16 1.507±1.22 0.019±0.01 0.108±0.02 0.175±0.00 0.031±0.01 N/A 0.051±0.04 0.196±0.07 1.319±0.42
ENSG00000156374 ENST00000337211 N/A N/A 0.372±0.00 0.602±0.00 0.991±0.33 0.586±0.00 0.747±0.00 0.656±0.00 N/A 0.851±0.00 1.804±0.00 2.563±0.00 0.990±0.72 4.065±0.00
ENST00000369847 2.930±0.00 3.835±0.00 0.185±0.00 0.675±0.27 1.267±0.61 0.716±0.56 0.994±0.47 0.909±0.45 1.652±0.00 0.444±0.00 1.139±0.00 3.417±1.31 1.787±0.11 5.319±1.49
ENST00000490296 1.212±0.00 N/A N/A 1.634±0.00 1.477±0.00 N/A N/A 0.570±0.00 0.639±0.00 0.802±0.00 0.968±0.00 N/A N/A 1.039±0.00
ENST00000492755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212413 ENST00000391111 N/A 0.563±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025041 ENSMUST00000086961 2.373±0.00 6.872±2.20 N/A N/A 5.500±2.28 3.828±1.44 N/A 5.806±2.97 1.451±0.61 3.151±0.00 N/A 7.544±3.33 N/A N/A
ENSMUST00000168536 5.908±1.65 3.292±1.11 6.444±1.30 N/A 3.196±1.53 1.740±0.61 3.655±0.27 3.841±2.05 3.287±0.94 7.912±1.03 0.311±0.09 5.158±2.11 1.967±0.13 4.734±2.06
ENSMUST00000172239 3.318±1.28 N/A 6.578±0.60 24.084±0.00 3.440±1.01 N/A 4.002±0.87 10.736±1.91 5.906±1.39 N/A 1.394±0.32 11.709±1.23 9.012±4.75 10.218±2.24
ENSMUST00000174731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.842±0.11 28.101±0.00 29.443±6.80 68.511±0.00
ENSMUSG00000025050 ENSMUST00000026032 4.638±2.69 4.158±1.64 6.948±1.23 6.019±4.36 2.407±0.38 3.281±1.66 0.944±0.11 3.163±1.69 3.168±1.02 1.060±0.21 1.356±0.38 6.265±2.95 5.522±2.82 14.935±4.10
ENSMUSG00000034336 ENSMUST00000037636 N/A 3.082±0.63 N/A 164.989±84.18 N/A 0.809±0.08 N/A N/A N/A N/A N/A N/A N/A N/A

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