C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI5-dependent recombination repair 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000156384 SFR1 9606 + 10:104122058-104126385 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000369727 SFR1-002 104122165-104126385 protein_coding
  ENST00000369729 SFR1-001 104122058-104126385 protein_coding
  ENST00000463224 SFR1-003 104122058-104123363 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369727ENST00000369729
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369727 1.254±0.00 2.379±0.00 0.501±0.00 2.343±0.12 1.405±0.56 1.500±0.55 N/A 0.578±0.00 0.450±0.00 0.280±0.00 0.839±0.83 2.478±1.58 0.563±0.42 2.221±1.56
ENST00000369729 1.184±0.00 N/A N/A N/A 0.850±0.00 N/A 0.836±0.27 1.621±0.00 1.067±0.00 1.439±0.00 0.017±0.00 2.662±0.49 0.525±0.37 3.351±1.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095H CIL_00095H_0001 VISTA 10:104027242-104629417
CIL_0006FJ CIL_0006FJ_0001 CGP 10:104031286-104126385
CIL_0006FG CIL_0006FG_0001 CGP 10:104122058-104232362

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0032798 IDA Swi5-Sfr1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021974 sfr1 SWI5-dependent recombination repair 1 protein_coding Danio_rerio
ENSMUSG00000025066 Sfr1 SWI5 dependent recombination repair 1 protein_coding Mus_musculus

Loading