C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0006FJ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065618-ENSG00000156384 CGP 9606 10:104031286-104126385
GeneTranscriptPositionBiotype
ENSG00000065618 (COL17A1)
collagen, type XVII, alpha 1
ENST00000353479 (COL17A1-001) 104031286-104086002 protein_coding
ENST00000369733 (COL17A1-003) 104031286-104086002 protein_coding
ENST00000393211 (COL17A1-007) 104059317-104085778 protein_coding
ENST00000433822 (COL17A1-002) 104031288-104032968 protein_coding
ENST00000480127 (COL17A1-006) 104055176-104055975 processed_transcript
ENST00000483876 (COL17A1-004) 104070461-104080654 retained_intron
ENST00000488320 (COL17A1-005) 104059685-104064548 retained_intron
ENSG00000156384 (SFR1)
SWI5-dependent recombination repair 1
ENST00000369727 (SFR1-002) 104122165-104126385 protein_coding
ENST00000369729 (SFR1-001) 104122058-104126385 protein_coding
ENST00000463224 (SFR1-003) 104122058-104123363 processed_transcript
CIL_0006FJ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025064-ENSMUSG00000025066 CGP 10090 19:47646344-47735588
GeneTranscriptPositionBiotype
ENSMUSG00000025064 (Col17a1)
collagen, type XVII, alpha 1
ENSMUST00000026045 (Col17a1-001) 47646344-47692094 protein_coding
ENSMUST00000086923 (Col17a1-004) 47646344-47692094 protein_coding
ENSMUST00000145254 (Col17a1-002) 47669283-47671048 processed_transcript
ENSMUST00000151102 (Col17a1-003) 47648100-47649595 processed_transcript
ENSMUSG00000025066 (Sfr1)
SWI5 dependent recombination repair 1
ENSMUST00000099353 (Sfr1-201) 47731756-47735588 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FJ_0001ENSG00000065618ENST00000353479ENST00000369733ENST00000393211ENST00000433822ENST00000480127ENST00000483876ENST00000488320ENSG00000156384ENST00000369727ENST00000369729ENST00000463224CIL_0006FJ_0002ENSMUSG00000025064ENSMUST00000026045ENSMUST00000086923ENSMUST00000145254ENSMUST00000151102ENSMUSG00000025066ENSMUST00000099353
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FJ_0001ENSG00000065618ENST00000353479ENST00000369733ENST00000393211ENST00000433822ENSG00000156384ENST00000369727ENST00000369729CIL_0006FJ_0002ENSMUSG00000025064ENSMUST00000026045ENSMUST00000086923ENSMUST00000151102ENSMUSG00000025066ENSMUST00000099353
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065618 ENST00000353479 0.187±0.00 0.309±0.00 N/A N/A 5.257±3.70 1.084±0.88 0.009±0.00 0.068±0.00 N/A 0.401±0.22 N/A 8.332±9.30 79.100±37.15 3.781±0.00
ENST00000369733 0.089±0.00 N/A 0.060±0.00 0.162±0.00 N/A 1.912±1.52 0.052±0.00 0.073±0.00 0.842±0.00 N/A N/A 1.065±1.03 N/A N/A
ENST00000393211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A
ENST00000433822 N/A 0.501±0.00 N/A N/A N/A 0.876±0.00 N/A 0.469±0.00 0.057±0.00 N/A N/A 14.917±10.79 125.098±0.00 11.924±9.95
ENST00000480127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000156384 ENST00000369727 1.254±0.00 2.379±0.00 0.501±0.00 2.343±0.12 1.405±0.56 1.500±0.55 N/A 0.578±0.00 0.450±0.00 0.280±0.00 0.839±0.83 2.478±1.58 0.563±0.42 2.221±1.56
ENST00000369729 1.184±0.00 N/A N/A N/A 0.850±0.00 N/A 0.836±0.27 1.621±0.00 1.067±0.00 1.439±0.00 0.017±0.00 2.662±0.49 0.525±0.37 3.351±1.10
ENST00000463224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025064 ENSMUST00000026045 0.151±0.01 0.013±0.00 1.124±0.07 0.346±0.07 4.813±2.12 0.078±0.02 0.084±0.06 0.125±0.00 0.045±0.02 2.197±1.13 0.144±0.11 0.182±0.08 0.050±0.01 0.530±0.06
ENSMUST00000086923 N/A 0.011±0.01 0.557±0.08 0.152±0.05 2.729±0.55 0.052±0.01 0.103±0.07 0.053±0.02 0.047±0.01 1.324±0.00 0.059±0.03 0.144±0.06 0.148±0.10 0.311±0.08
ENSMUST00000145254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151102 N/A 0.059±0.00 N/A N/A N/A 0.227±0.05 0.065±0.00 0.114±0.05 0.078±0.01 N/A N/A 0.564±0.19 N/A N/A
ENSMUSG00000025066 ENSMUST00000099353 39.440±18.65 44.297±4.04 31.623±2.78 50.327±16.73 46.690±13.47 27.300±3.19 26.876±10.01 26.978±10.20 21.917±8.39 28.775±11.86 17.498±6.55 56.790±25.57 49.294±27.65 26.042±5.90

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