C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SEC13 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157020 SEC13 9606 - 3:10293131-10321178 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337354 SEC13-002 10300931-10321082 protein_coding
  ENST00000350697 SEC13-001 10300931-10321178 protein_coding
  ENST00000383801 SEC13-003 10300961-10321084 protein_coding
  ENST00000397099 SEC13-009 10315142-10321086 retained_intron
  ENST00000397101 SEC13-008 10314953-10321112 retained_intron
  ENST00000397102 SEC13-010 10313080-10321112 retained_intron
  ENST00000397105 SEC13-011 10311573-10321093 retained_intron
  ENST00000397109 SEC13-004 10300931-10321041 protein_coding
  ENST00000397117 SEC13-005 10300950-10321061 protein_coding
  ENST00000428626 SEC13-007 10318068-10321056 protein_coding
  ENST00000431352 SEC13-012 10312646-10321060 protein_coding
  ENST00000432213 SEC13-019 10319206-10321093 protein_coding
  ENST00000445064 SEC13-006 10318070-10321058 protein_coding
  ENST00000476597 SEC13-018 10304035-10305910 retained_intron
  ENST00000477547 SEC13-014 10303551-10318080 retained_intron
  ENST00000479868 SEC13-015 10300933-10313971 retained_intron
  ENST00000482647 SEC13-016 10311573-10312834 retained_intron
  ENST00000490283 SEC13-017 10304111-10305710 retained_intron
  ENST00000492602 SEC13-013 10293131-10305072 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337354ENST00000350697ENST00000383801ENST00000397102ENST00000397109ENST00000397117ENST00000476597ENST00000479868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337354 N/A N/A N/A 6.200±0.00 N/A 8.218±0.00 N/A 14.080±0.00 3.746±0.00 N/A N/A 25.451±0.00 45.425±12.05 N/A
ENST00000350697 32.663±0.00 47.985±0.00 5.230±0.00 16.470±9.85 29.054±9.08 28.511±0.00 11.536±7.75 55.357±0.00 25.134±18.84 30.346±23.70 47.627±33.23 28.442±19.85 38.679±1.80 33.422±11.37
ENST00000383801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.310±0.00 N/A N/A
ENST00000397102 N/A N/A 12.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397109 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.526±0.00 N/A N/A N/A N/A
ENST00000397117 N/A N/A N/A N/A N/A N/A 1.689±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000476597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.463±0.00 46.714±0.00 30.611±0.00
ENST00000479868 N/A N/A 1.838±0.00 N/A N/A 4.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064V CIL_00064V_0001 CGP 3:10285675-10321178
CIL_00064R CIL_00064R_0001 CGP 3:10293131-10708031

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IPI:IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 NAS intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031080 NAS nuclear pore outer ring
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0051028 IEA mRNA transport
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054807 sec13 SEC13 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000030298 Sec13 SEC13 homolog (S. cerevisiae) protein_coding Mus_musculus

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