C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC13 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000350697 SEC13-001 ENSG00000157020 9606 - 3:10300931-10321178 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350697
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350697 32.663±0.00 47.985±0.00 5.230±0.00 16.470±9.85 29.054±9.08 28.511±0.00 11.536±7.75 55.357±0.00 25.134±18.84 30.346±23.70 47.627±33.23 28.442±19.85 38.679±1.80 33.422±11.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064V CIL_00064V_0001 CGP 3:10285675-10321178
CIL_00064R CIL_00064R_0001 CGP 3:10293131-10708031

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IPI:IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005789 TAS endoplasmic reticulum membrane
GO:0005829 TAS cytosol
GO:0006886 NAS intracellular protein transport
GO:0006888 TAS ER to Golgi vesicle-mediated transport
GO:0012507 TAS ER to Golgi transport vesicle membrane
GO:0018279 TAS protein N-linked glycosylation via asparagine
GO:0019886 TAS antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0031080 NAS nuclear pore outer ring
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0048208 TAS COPII vesicle coating
GO:0051028 IEA mRNA transport
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032440 Sec13-001 protein_coding Mus_musculus 0 1247
ENSMUST00000145979 Sec13-002 processed_transcript Mus_musculus 0 375
ENSMUST00000138204 Sec13-003 retained_intron Mus_musculus 8.40779e-45 185

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