C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00064R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157020-ENSG00000157087 CGP 9606 3:10293131-10708031
GeneTranscriptPositionBiotype
ENSG00000157020 (SEC13)
SEC13 homolog (S. cerevisiae) 		ENST00000337354 (SEC13-002) 10300931-10321082 protein_coding
ENST00000350697 (SEC13-001) 10300931-10321178 protein_coding
ENST00000383801 (SEC13-003) 10300961-10321084 protein_coding
ENST00000397099 (SEC13-009) 10315142-10321086 retained_intron
ENST00000397101 (SEC13-008) 10314953-10321112 retained_intron
ENST00000397102 (SEC13-010) 10313080-10321112 retained_intron
ENST00000397105 (SEC13-011) 10311573-10321093 retained_intron
ENST00000397109 (SEC13-004) 10300931-10321041 protein_coding
ENST00000397117 (SEC13-005) 10300950-10321061 protein_coding
ENST00000428626 (SEC13-007) 10318068-10321056 protein_coding
ENST00000431352 (SEC13-012) 10312646-10321060 protein_coding
ENST00000432213 (SEC13-019) 10319206-10321093 protein_coding
ENST00000445064 (SEC13-006) 10318070-10321058 protein_coding
ENST00000476597 (SEC13-018) 10304035-10305910 retained_intron
ENST00000477547 (SEC13-014) 10303551-10318080 retained_intron
ENST00000479868 (SEC13-015) 10300933-10313971 retained_intron
ENST00000482647 (SEC13-016) 10311573-10312834 retained_intron
ENST00000490283 (SEC13-017) 10304111-10305710 retained_intron
ENST00000492602 (SEC13-013) 10293131-10305072 processed_transcript
ENSG00000157087 (ATP2B2)
ATPase, Ca++ transporting, plasma membrane 2 		ENST00000352432 (ATP2B2-001) 10324023-10449613 protein_coding
ENST00000360273 (ATP2B2-201) 10324023-10505584 protein_coding
ENST00000383800 (ATP2B2-002) 10324023-10505657 protein_coding
ENST00000397077 (ATP2B2-005) 10324023-10708031 protein_coding
ENST00000452124 (ATP2B2-003) 10328098-10410675 protein_coding
ENST00000460129 (ATP2B2-004) 10324023-10534133 nonsense_mediated_decay
ENST00000467702 (ATP2B2-006) 10328446-10336300 processed_transcript
ENST00000468426 (ATP2B2-009) 10328811-10332324 processed_transcript
ENST00000480680 (ATP2B2-008) 10387884-10505584 retained_intron
ENSG00000224771 (ATP2B2-IT2)
ATP2B2 intronic transcript 2 (non-protein coding) 		ENST00000419591 (ATP2B2-IT2-001) 10626021-10626807 sense_intronic
ENSG00000236999 (ATP2B2-IT1)
ATP2B2 intronic transcript 1 (non-protein coding) 		ENST00000440152 (ATP2B2-IT1-001) 10566255-10570375 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_00064R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030298-ENSMUSG00000030302 CGP 10090 6:113728067-114042613
GeneTranscriptPositionBiotype
ENSMUSG00000030298 (Sec13)
SEC13 homolog (S. cerevisiae) 		ENSMUST00000032440 (Sec13-001) 113728067-113740743 protein_coding
ENSMUST00000138204 (Sec13-003) 113730430-113735070 retained_intron
ENSMUST00000145979 (Sec13-002) 113730596-113735070 processed_transcript
ENSMUSG00000030302 (Atp2b2)
ATPase, Ca++ transporting, plasma membrane 2 		ENSMUST00000089003 (Atp2b2-004) 113745669-113891539 protein_coding
ENSMUST00000101044 (Atp2b2-003) 113748294-113934681 protein_coding
ENSMUST00000101045 (Atp2b2-001) 113745675-114042026 protein_coding
ENSMUST00000135199 (Atp2b2-005) 113803338-113891370 retained_intron
ENSMUST00000144507 (Atp2b2-006) 113842331-113910582 processed_transcript
ENSMUST00000152831 (Atp2b2-002) 113745670-114042015 nonsense_mediated_decay
ENSMUST00000154738 (Atp2b2-007) 113842549-114042613 processed_transcript
ENSMUSG00000087053 (Gm15082)
predicted gene 15082 		ENSMUST00000147045 (Gm15082-001) 113937739-113940206 lincRNA
ENSMUSG00000087083 (Gm15083)
predicted gene 15083 		ENSMUST00000138670 (Gm15083-001) 114004789-114052108 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00064R_0001ENSG00000157020ENST00000337354ENST00000350697ENST00000383801ENST00000397102ENST00000397109ENST00000397117ENST00000476597ENST00000479868ENSG00000157087ENST00000352432ENST00000383800ENST00000397077ENST00000452124ENST00000467702ENST00000480680ENSG00000224771ENST00000419591ENSG00000236999ENST00000440152CIL_00064R_0002ENSMUSG00000030298ENSMUST00000032440ENSMUSG00000030302ENSMUST00000089003ENSMUST00000101044ENSMUST00000101045ENSMUST00000135199ENSMUST00000144507ENSMUST00000152831ENSMUST00000154738ENSMUSG00000087053ENSMUST00000147045ENSMUSG00000087083ENSMUST00000138670
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157020 ENST00000337354 N/A N/A N/A 6.200±0.00 N/A 8.218±0.00 N/A 14.080±0.00 3.746±0.00 N/A N/A 25.451±0.00 45.425±12.05 N/A
ENST00000350697 32.663±0.00 47.985±0.00 5.230±0.00 16.470±9.85 29.054±9.08 28.511±0.00 11.536±7.75 55.357±0.00 25.134±18.84 30.346±23.70 47.627±33.23 28.442±19.85 38.679±1.80 33.422±11.37
ENST00000383801 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.310±0.00 N/A N/A
ENST00000397099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397102 N/A N/A 12.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397109 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.526±0.00 N/A N/A N/A N/A
ENST00000397117 N/A N/A N/A N/A N/A N/A 1.689±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000428626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000432213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.463±0.00 46.714±0.00 30.611±0.00
ENST00000477547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479868 N/A N/A 1.838±0.00 N/A N/A 4.146±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157087 ENST00000352432 0.039±0.00 0.058±0.00 N/A 8.287±0.00 0.175±0.00 0.041±0.00 0.008±0.01 0.991±0.91 1.023±0.99 0.004±0.00 N/A 0.069±0.05 0.094±0.00 0.312±0.00
ENST00000360273 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000383800 N/A N/A N/A 13.845±0.54 N/A N/A N/A N/A N/A N/A 0.618±0.25 N/A N/A 0.095±0.00
ENST00000397077 N/A N/A N/A 5.248±1.02 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452124 N/A N/A N/A 6.105±0.00 0.077±0.04 N/A 0.013±0.00 N/A N/A N/A 0.899±0.00 0.109±0.00 0.017±0.00 0.160±0.00
ENST00000460129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A
ENST00000468426 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480680 N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A 0.154±0.00 N/A N/A 0.027±0.00 0.042±0.00 N/A
ENSG00000224771 ENST00000419591 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A 1.103±0.35
ENSG00000236999 ENST00000440152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.298±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030298 ENSMUST00000032440 87.304±4.25 40.764±6.47 69.810±17.46 55.192±32.12 49.882±7.29 68.023±11.97 36.455±2.62 52.509±3.46 56.309±20.36 49.680±6.89 32.491±5.66 78.581±15.14 69.533±30.56 47.493±15.29
ENSMUST00000138204 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000030302 ENSMUST00000089003 0.643±0.11 0.705±0.17 N/A 12.306±10.16 0.034±0.00 0.128±0.01 0.108±0.00 0.123±0.03 0.384±0.20 N/A 0.033±0.00 N/A 0.044±0.05 N/A
ENSMUST00000101044 0.581±0.54 0.304±0.17 0.035±0.00 N/A 0.046±0.04 0.074±0.03 0.083±0.01 N/A 0.183±0.09 0.826±0.33 0.045±0.00 3.248±0.40 0.034±0.03 0.126±0.00
ENSMUST00000101045 0.885±0.85 0.109±0.00 0.060±0.00 14.558±0.00 0.062±0.00 0.090±0.00 0.101±0.06 0.329±0.07 N/A 0.172±0.03 0.017±0.01 1.234±0.61 N/A N/A
ENSMUST00000135199 N/A N/A N/A N/A N/A 0.105±0.02 N/A N/A 0.139±0.00 N/A 0.026±0.01 N/A N/A N/A
ENSMUST00000144507 N/A N/A N/A N/A 0.222±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152831 0.085±0.00 N/A N/A 1.516±0.00 N/A 0.162±0.05 0.115±0.02 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.096±0.02 N/A N/A N/A
ENSMUSG00000087053 ENSMUST00000147045 0.117±0.03 N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A 0.024±0.00 N/A 0.080±0.06 N/A 0.040±0.02
ENSMUSG00000087083 ENSMUST00000138670 N/A N/A N/A 0.032±0.03 N/A N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 0.028±0.00

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