C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synapsin II
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157152 SYN2 9606 + 3:12004402-12191400 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000424884 SYN2-007 12071558-12151323 processed_transcript
  ENST00000425297 SYN2-006 12161545-12185377 nonsense_mediated_decay
  ENST00000439861 SYN2-005 12148557-12191385 retained_intron
  ENST00000447752 SYN2-004 12158649-12168421 processed_transcript
  ENST00000620175 SYN2-002 12004406-12185728 protein_coding
  ENST00000621198 SYN2-001 12004402-12191400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverLungMuscleOvaryPlacentaTestisENST00000425297ENST00000439861ENST00000620175ENST00000621198
Transcript ID Adipose Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000425297 N/A 7.836±0.00 N/A N/A N/A N/A N/A 0.972±0.00 1.490±0.00
ENST00000439861 31.112±0.00 N/A N/A 0.752±0.00 N/A N/A N/A N/A 2.280±0.00
ENST00000620175 N/A 26.402±16.96 1.834±0.00 N/A N/A N/A 0.246±0.00 1.332±0.05 N/A
ENST00000621198 N/A N/A N/A N/A 0.551±0.00 0.578±0.00 0.578±0.14 1.496±0.25 3.839±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SM CIL_0005SM_0001 CGP 3:11790442-12191400
CIL_0004U7 CIL_0004U7_0002 CGP 3:12004402-12191400

Gene Ontology
GO IDEvidence TypeGO Description
GO:0007269 IEA neurotransmitter secretion
GO:0030672 IEA synaptic vesicle membrane
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045945 syn2a synapsin IIa protein_coding Danio_rerio
ENSDARG00000078971 SYN2 (2 of 2) synapsin II protein_coding Danio_rerio
ENSMUSG00000009394 Syn2 synapsin II protein_coding Mus_musculus

Loading