C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005SM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144559-ENSG00000157152 CGP 9606 3:11790442-12191400
GeneTranscriptPositionBiotype
ENSG00000144559 (TAMM41)
TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 		ENST00000273037 (TAMM41-001) 11790442-11846919 protein_coding
ENST00000411947 (TAMM41-002) 11829756-11846892 nonsense_mediated_decay
ENST00000414736 (TAMM41-012) 11790543-11817337 nonsense_mediated_decay
ENST00000417723 (TAMM41-003) 11833026-11846885 nonsense_mediated_decay
ENST00000444133 (TAMM41-008) 11807294-11846779 protein_coding
ENST00000455809 (TAMM41-005) 11790442-11846772 protein_coding
ENST00000457498 (TAMM41-006) 11790446-11846881 nonsense_mediated_decay
ENST00000460246 (TAMM41-010) 11817088-11829910 retained_intron
ENST00000486090 (TAMM41-007) 11790448-11811559 retained_intron
ENST00000494388 (TAMM41-011) 11843539-11846864 retained_intron
ENST00000498127 (TAMM41-009) 11790442-11810059 retained_intron
ENSG00000157150 (TIMP4)
TIMP metallopeptidase inhibitor 4 		ENST00000287814 (TIMP4-001) 12153051-12159351 protein_coding
ENSG00000224263 (CYCSP12)
cytochrome c, somatic pseudogene 12 		ENST00000437729 (CYCSP12-001) 11878830-11879129 processed_pseudogene
ENSG00000226642 (ACTG1P12)
actin, gamma 1 pseudogene 12 		ENST00000423183 (ACTG1P12-001) 12070195-12071360 processed_pseudogene
ENSG00000230342 (FANCD2P2)
Fanconi anemia, complementation group D2 pseudogene 2 		ENST00000437591 (FANCD2P2-001) 11859674-11891172 unprocessed_pseudogene
ENSG00000233026 (AC026166.2)
MT-CO1 pseudogene 5 		ENST00000433573 (AC026166.2-001) 12165299-12165642 processed_pseudogene
ENSG00000263988 (RN7SL147P)
RNA, 7SL, cytoplasmic 147, pseudogene 		ENST00000487345 (RN7SL147P-201) 11952788-11953085 misc_RNA
ENSG00000265870 (AC026166.1)
 ENST00000583987 (AC026166.1-201) 12071038-12071121 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0005SM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030316-ENSMUSG00000009394 CGP 10090 6:115004381-115282626
GeneTranscriptPositionBiotype
ENSMUSG00000009394 (Syn2)
synapsin II 		ENSMUST00000009538 (Syn2-201) 115134902-115282626 protein_coding
ENSMUST00000169345 (Syn2-202) 115134902-115276559 protein_coding
ENSMUSG00000030316 (Tamm41)
TAM41, mitochondrial translocator assembly and maintenance protein, homolog (S. cerevisiae) 		ENSMUST00000032461 (Tamm41-001) 115004381-115037876 protein_coding
ENSMUST00000112975 (Tamm41-002) 115024721-115037876 retained_intron
ENSMUST00000137654 (Tamm41-006) 115004388-115012537 retained_intron
ENSMUST00000144445 (Tamm41-005) 115031278-115032265 processed_transcript
ENSMUST00000144969 (Tamm41-003) 115008193-115016375 retained_intron
ENSMUST00000154621 (Tamm41-004) 115016203-115037825 nonsense_mediated_decay
ENSMUST00000172495 (Tamm41-007) 115010845-115032264 nonsense_mediated_decay
ENSMUST00000174848 (Tamm41-008) 115012217-115037855 protein_coding
ENSMUSG00000030317 (Timp4)
tissue inhibitor of metalloproteinase 4 		ENSMUST00000032462 (Timp4-201) 115245616-115251849 protein_coding
ENSMUSG00000097486 (Gm17733)
predicted gene, 17733 		ENSMUST00000181883 (Gm17733-201) 115127602-115134772 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SM_0001ENSG00000144559ENST00000273037ENST00000411947ENST00000414736ENST00000417723ENST00000444133ENST00000455809ENST00000457498ENST00000460246ENST00000486090ENST00000494388ENST00000498127ENSG00000157150ENST00000287814ENSG00000224263ENST00000437729ENSG00000226642ENST00000423183ENSG00000230342ENST00000437591ENSG00000233026ENST00000433573ENSG00000263988ENST00000487345ENSG00000265870ENST00000583987CIL_0005SM_0002ENSMUSG00000009394ENSMUST00000009538ENSMUST00000169345ENSMUSG00000030316ENSMUST00000032461ENSMUST00000112975ENSMUST00000137654ENSMUST00000144445ENSMUST00000144969ENSMUST00000154621ENSMUST00000172495ENSMUST00000174848ENSMUSG00000030317ENSMUST00000032462ENSMUSG00000097486ENSMUST00000181883
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005SM_0001ENSG00000144559ENST00000273037ENST00000411947ENST00000414736ENST00000444133ENST00000455809ENST00000457498ENST00000460246ENST00000486090ENST00000494388ENST00000498127ENSG00000157150ENST00000287814ENSG00000224263ENST00000437729ENSG00000226642ENST00000423183ENSG00000230342ENST00000437591ENSG00000233026ENST00000433573ENSG00000263988ENST00000487345ENSG00000265870ENST00000583987CIL_0005SM_0002ENSMUSG00000009394ENSMUST00000009538ENSMUST00000169345ENSMUSG00000030316ENSMUST00000032461ENSMUST00000112975ENSMUST00000144969ENSMUST00000154621ENSMUST00000174848ENSMUSG00000030317ENSMUST00000032462ENSMUSG00000097486ENSMUST00000181883
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144559 ENST00000273037 N/A N/A N/A 1.289±0.29 1.294±0.00 1.438±0.00 0.730±0.09 N/A 1.553±0.46 2.053±0.00 0.940±0.69 1.488±0.48 0.787±0.02 1.259±0.00
ENST00000411947 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.869±0.00 N/A N/A N/A N/A
ENST00000414736 N/A N/A N/A 1.908±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.006±0.00 2.835±0.00
ENST00000417723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444133 N/A N/A N/A 0.338±0.00 0.656±0.00 N/A 0.367±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000455809 5.159±0.00 2.873±0.00 N/A 0.653±0.00 N/A 1.916±0.00 1.074±0.00 4.007±0.00 0.675±0.00 0.773±0.00 N/A 4.804±0.45 2.598±1.44 2.888±2.02
ENST00000457498 N/A N/A N/A 0.337±0.00 N/A 1.156±0.00 N/A N/A N/A N/A 0.180±0.00 0.318±0.00 N/A N/A
ENST00000460246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.855±0.00
ENST00000486090 N/A 0.887±0.00 N/A N/A 0.333±0.04 0.491±0.00 N/A N/A 0.343±0.00 0.766±0.00 N/A 0.411±0.00 N/A N/A
ENST00000494388 N/A N/A N/A N/A N/A N/A N/A 0.348±0.00 N/A N/A N/A N/A N/A N/A
ENST00000498127 N/A N/A N/A N/A N/A 1.737±0.00 0.629±0.00 0.334±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000157150 ENST00000287814 78.209±0.00 4.710±0.00 0.568±0.00 N/A 40.458±33.41 8.152±5.56 11.228±0.00 1.113±1.06 2.978±2.52 0.670±0.08 5.295±0.81 1.211±0.57 7.415±4.66 1.791±0.00
ENSG00000224263 ENST00000437729 N/A N/A N/A N/A N/A N/A 0.154±0.00 0.058±0.00 0.052±0.00 N/A N/A N/A N/A 0.051±0.00
ENSG00000226642 ENST00000423183 0.115±0.00 0.054±0.00 N/A 0.193±0.00 0.197±0.06 0.053±0.00 0.016±0.00 0.019±0.00 N/A N/A 0.015±0.00 0.061±0.00 N/A 0.131±0.08
ENSG00000230342 ENST00000437591 0.027±0.00 N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A 0.009±0.00 0.072±0.00 0.132±0.00
ENSG00000233026 ENST00000433573 0.030±0.00 N/A N/A 0.399±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.145±0.01
ENSG00000263988 ENST00000487345 0.065±0.00 0.204±0.00 N/A N/A 0.073±0.00 N/A 0.132±0.00 N/A 0.063±0.00 0.137±0.00 N/A N/A N/A 0.257±0.00
ENSG00000265870 ENST00000583987 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.544±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000009394 ENSMUST00000009538 1.376±0.09 3.805±1.59 1.192±0.05 7.130±5.06 4.195±1.07 1.672±0.64 0.459±0.07 1.876±0.23 0.018±0.01 1.813±0.31 N/A 1.788±0.85 0.136±0.16 1.198±0.30
ENSMUST00000169345 2.344±0.08 5.408±2.59 5.987±1.00 24.907±16.61 3.974±1.09 1.926±0.93 1.429±0.22 2.367±0.28 0.030±0.02 3.819±0.38 0.237±0.00 1.986±1.28 0.077±0.05 1.275±0.49
ENSMUSG00000030316 ENSMUST00000032461 5.062±0.85 4.900±0.26 4.571±0.52 8.506±3.41 4.302±0.64 7.963±2.47 4.192±0.67 8.802±0.67 5.964±5.41 4.169±0.45 3.379±0.48 8.901±3.77 9.268±4.47 4.465±0.90
ENSMUST00000112975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.504±0.49 N/A N/A
ENSMUST00000137654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144969 0.553±0.00 N/A 0.399±0.00 0.207±0.00 0.314±0.00 N/A N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A
ENSMUST00000154621 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.495±0.00 N/A
ENSMUST00000172495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174848 6.230±0.89 33.585±7.37 N/A 6.939±0.78 8.379±2.02 8.673±2.84 2.526±0.74 7.778±2.27 3.832±3.04 7.677±1.73 1.041±0.00 17.394±5.71 2.500±0.00 3.396±0.87
ENSMUSG00000030317 ENSMUST00000032462 107.173±94.19 14.887±5.16 0.707±0.03 3.713±1.43 26.252±3.96 5.014±0.86 17.497±5.14 1.513±0.28 0.048±0.03 3.366±0.84 13.507±3.74 24.319±11.00 0.285±0.25 0.759±0.59
ENSMUSG00000097486 ENSMUST00000181883 0.090±0.00 N/A 0.035±0.01 0.144±0.09 0.102±0.05 N/A N/A 0.045±0.00 0.012±0.00 N/A N/A 0.071±0.00 N/A 0.132±0.06

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