C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin filament associated protein 1-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000157510 AFAP1L1 9606 + 5:149271871-149341802 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000296721 AFAP1L1-001 149271871-149341802 protein_coding
  ENST00000455574 AFAP1L1-003 149271871-149312375 retained_intron
  ENST00000508444 AFAP1L1-005 149301191-149302668 retained_intron
  ENST00000513665 AFAP1L1-004 149315640-149341802 retained_intron
  ENST00000515000 AFAP1L1-002 149271919-149340121 protein_coding
  ENST00000522492 AFAP1L1-006 149271895-149307613 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296721ENST00000455574ENST00000513665ENST00000515000
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296721 24.316±0.00 6.599±0.00 0.328±0.00 5.673±3.89 2.021±1.68 5.430±3.39 2.603±0.00 0.945±0.02 7.221±5.14 6.229±0.00 2.954±1.33 11.712±7.00 3.797±0.00
ENST00000455574 N/A N/A 0.222±0.00 N/A 0.383±0.00 N/A 1.206±0.00 N/A N/A N/A N/A N/A N/A
ENST00000513665 N/A 2.464±0.00 0.345±0.00 N/A 1.557±0.00 N/A 0.279±0.00 N/A N/A N/A 2.124±0.00 6.594±0.00 1.138±0.00
ENST00000515000 N/A N/A 0.113±0.00 N/A 0.355±0.00 0.992±0.00 N/A N/A 7.052±0.00 2.859±0.00 5.373±0.00 15.937±0.00 2.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZC CIL_0007ZC_0001 VISTA 5:149122130-149725513
CIL_0001GD CIL_0001GD_0003 CGP 5:149141483-149341802
CIL_000851 CIL_000851_0001 VISTA 5:149141792-149745303

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006518 afap1l1a actin filament associated protein 1-like 1a protein_coding Danio_rerio
ENSDARG00000056453 afap1l1b actin filament associated protein 1-like 1b protein_coding Danio_rerio
ENSDARG00000087755 AFAP1L1 (3 of 4) actin filament associated protein 1-like 1 protein_coding Danio_rerio
ENSDARG00000089162 afap1l1a actin filament associated protein 1-like 1a protein_coding Danio_rerio
ENSMUSG00000033032 Afap1l1 actin filament associated protein 1-like 1 protein_coding Mus_musculus

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