C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: actin filament associated protein 1-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000033032 Afap1l1 10090 - 18:61730261-61786702 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000120472 Afap1l1-001 61730261-61786702 protein_coding
  ENSMUST00000147278 Afap1l1-002 61730939-61786660 retained_intron
  ENSMUST00000154876 Afap1l1-003 61730261-61786611 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120472ENSMUST00000147278ENSMUST00000154876
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120472 13.107±4.02 5.210±1.66 4.345±0.17 3.905±1.87 6.792±2.78 4.803±2.30 23.573±1.77 8.850±1.06 1.585±0.89 70.997±9.44 16.540±0.81 4.831±2.04 16.105±15.66 1.121±0.53
ENSMUST00000147278 2.139±0.53 1.267±0.31 N/A 6.133±0.00 2.008±0.00 1.723±0.00 N/A N/A 0.422±0.10 13.551±2.01 N/A 2.605±1.13 16.065±8.10 1.488±1.14
ENSMUST00000154876 N/A N/A N/A N/A 1.389±0.00 N/A N/A 1.745±0.00 N/A N/A N/A 2.666±0.49 16.271±11.38 0.857±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000851 CIL_000851_0002 VISTA 18:61337492-61938739
CIL_0007ZC CIL_0007ZC_0002 VISTA 18:61351102-61954077
CIL_0001B2 CIL_0001B2_0002 CGP 18:61712440-61786702
CIL_0001F8 CIL_0001F8_0002 CGP 18:61730261-61911852

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006518 afap1l1a actin filament associated protein 1-like 1a protein_coding Danio_rerio
ENSDARG00000056453 afap1l1b actin filament associated protein 1-like 1b protein_coding Danio_rerio
ENSDARG00000087755 AFAP1L1 (3 of 4) actin filament associated protein 1-like 1 protein_coding Danio_rerio
ENSDARG00000089162 afap1l1a actin filament associated protein 1-like 1a protein_coding Danio_rerio
ENSG00000157510 AFAP1L1 actin filament associated protein 1-like 1 protein_coding Homo_sapiens

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