C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin filament associated protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296721 AFAP1L1-001 ENSG00000157510 9606 + 5:149271871-149341802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000296721
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000296721 24.316±0.00 6.599±0.00 0.328±0.00 5.673±3.89 2.021±1.68 5.430±3.39 2.603±0.00 0.945±0.02 7.221±5.14 6.229±0.00 2.954±1.33 11.712±7.00 3.797±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZC CIL_0007ZC_0001 VISTA 5:149122130-149725513
CIL_0001GD CIL_0001GD_0003 CGP 5:149141483-149341802
CIL_000851 CIL_000851_0001 VISTA 5:149141792-149745303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120472 Afap1l1-001 protein_coding Mus_musculus 0 2577
ENSMUST00000154876 Afap1l1-003 nonsense_mediated_decay Mus_musculus 0 1642
ENSMUST00000147278 Afap1l1-002 retained_intron Mus_musculus 0 1391
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000000000003 86

Loading