C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin filament associated protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515000 AFAP1L1-002 ENSG00000157510 9606 + 5:149271919-149340121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLungMuscleOvaryPlacentaTestisENST00000515000
Transcript ID Brain Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000515000 0.113±0.00 0.355±0.00 0.992±0.00 7.052±0.00 2.859±0.00 5.373±0.00 15.937±0.00 2.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZC CIL_0007ZC_0001 VISTA 5:149122130-149725513
CIL_0001GD CIL_0001GD_0003 CGP 5:149141483-149341802
CIL_000851 CIL_000851_0001 VISTA 5:149141792-149745303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0030054 IEA cell junction
GO:0042995 IEA cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120472 Afap1l1-001 protein_coding Mus_musculus 0 2398
ENSMUST00000154876 Afap1l1-003 nonsense_mediated_decay Mus_musculus 0 1463
ENSMUST00000147278 Afap1l1-002 retained_intron Mus_musculus 0 1212

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