C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retention in endoplasmic reticulum sorting receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378512 RER1-002 ENSG00000157916 9606 + 1:2391890-2403751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378512 24.114±0.00 30.371±0.00 3.648±0.00 3.830±0.00 13.207±5.04 9.450±3.93 10.161±7.63 19.845±12.63 26.849±23.12 9.452±6.48 17.032±10.24 26.081±7.52 18.465±0.00 25.238±8.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0001 VISTA 1:1910870-2513425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030914 Rer1-001 protein_coding Mus_musculus 0 549
ENSMUST00000149796 Rer1-002 processed_transcript Mus_musculus 0 499
ENSMUST00000125357 Rer1-003 processed_transcript Mus_musculus 1e-18 99

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