C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: retention in endoplasmic reticulum sorting receptor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000605895 RER1-001 ENSG00000157916 9606 + 1:2391833-2405444 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LungOvaryENST00000605895
Transcript ID Lung Ovary
ENST00000605895 0.638±0.00 6.596±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0001 VISTA 1:1910870-2513425

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IDA Golgi apparatus
GO:0006890 IDA retrograde vesicle-mediated transport, Golgi to ER
GO:0007528 IEA neuromuscular junction development
GO:0009986 IEA cell surface
GO:0016021 IEA integral component of membrane
GO:0030173 IDA integral component of Golgi membrane
GO:0033130 IEA acetylcholine receptor binding
GO:0071340 IEA skeletal muscle acetylcholine-gated channel clustering
GO:0090004 IEA positive regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030914 Rer1-001 protein_coding Mus_musculus 0 1092
ENSMUST00000149796 Rer1-002 processed_transcript Mus_musculus 0 965
ENSMUST00000125357 Rer1-003 processed_transcript Mus_musculus 3e-18 99

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