C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000158169 FANCC 9606 - 9:95099054-95317709 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289081 FANCC-001 95099054-95317702 protein_coding
  ENST00000375305 FANCC-002 95099055-95317225 protein_coding
  ENST00000433829 FANCC-004 95172043-95316894 protein_coding
  ENST00000464627 FANCC-006 95107101-95126918 processed_transcript
  ENST00000464653 FANCC-003 95114135-95127420 processed_transcript
  ENST00000474949 FANCC-005 95171116-95317709 processed_transcript
  ENST00000477942 FANCC-008 95109597-95135543 processed_transcript
  ENST00000480712 FANCC-009 95107348-95135373 processed_transcript
  ENST00000490972 FANCC-201 95110228-95317709 protein_coding
  ENST00000493098 FANCC-010 95145270-95150033 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLungOvaryPlacentaTestisENST00000289081ENST00000464627ENST00000490972
Transcript ID Adipose Adrenal Breast Heart Lung Ovary Placenta Testis
ENST00000289081 0.438±0.00 N/A 0.767±0.00 0.297±0.00 1.099±0.00 0.925±0.05 0.747±0.02 3.164±0.28
ENST00000464627 N/A N/A N/A N/A N/A N/A N/A 6.770±0.00
ENST00000490972 N/A 0.297±0.00 0.223±0.00 0.110±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J5 CIL_0002J5_0001 CGP 9:94726701-95317709
CIL_0002J8 CIL_0002J8_0001 CGP 9:95099054-95517057

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002262 IEA myeloid cell homeostasis
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005829 IDA cytosol
GO:0006281 TAS:IEA DNA repair
GO:0006289 IEA nucleotide-excision repair
GO:0006461 TAS protein complex assembly
GO:0007276 IEA gamete generation
GO:0007281 IEA germ cell development
GO:0019430 IEA removal of superoxide radicals
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055232 fancc Fanconi anemia, complementation group C protein_coding Danio_rerio
ENSMUSG00000021461 Fancc Fanconi anemia, complementation group C protein_coding Mus_musculus

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