C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Fanconi anemia, complementation group C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000021461 Fancc 10090 - 13:63304709-63497278 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000073029 Fancc-001 63304709-63431745 protein_coding
  ENSMUST00000099444 Fancc-006 63312135-63431694 protein_coding
  ENSMUST00000159024 Fancc-017 63347512-63497278 protein_coding
  ENSMUST00000159056 Fancc-014 63321299-63331864 processed_transcript
  ENSMUST00000160151 Fancc-005 63330539-63431745 retained_intron
  ENSMUST00000160166 Fancc-016 63311754-63317395 processed_transcript
  ENSMUST00000160333 Fancc-004 63316500-63431722 retained_intron
  ENSMUST00000160336 Fancc-015 63312496-63325018 processed_transcript
  ENSMUST00000160617 Fancc-009 63402934-63409768 protein_coding
  ENSMUST00000160735 Fancc-012 63340390-63398167 protein_coding
  ENSMUST00000160931 Fancc-007 63402877-63431683 protein_coding
  ENSMUST00000161507 Fancc-011 63347482-63398294 retained_intron
  ENSMUST00000161656 Fancc-013 63330539-63352172 processed_transcript
  ENSMUST00000161977 Fancc-003 63311539-63431724 protein_coding
  ENSMUST00000162375 Fancc-010 63347473-63406297 protein_coding
  ENSMUST00000162971 Fancc-008 63347422-63431255 protein_coding
  ENSMUST00000163091 Fancc-002 63311755-63431725 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainLiverPlacentaTestisENSMUST00000099444ENSMUST00000159056ENSMUST00000160151ENSMUST00000161977
Transcript ID Adipose Brain Liver Placenta Testis
ENSMUST00000099444 5.690±0.00 N/A 3.503±0.71 2.122±0.70 4.166±0.82
ENSMUST00000159056 N/A N/A N/A 3.459±0.00 N/A
ENSMUST00000160151 N/A N/A 2.424±0.44 N/A N/A
ENSMUST00000161977 N/A 3.464±0.00 1.944±0.35 1.676±0.24 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J6 CIL_0002J6_0002 CGP 13:62864753-63326096
CIL_0002J5 CIL_0002J5_0002 CGP 13:63014934-63497278
CIL_00086R CIL_00086R_0002 VISTA 13:63254160-63855734
CIL_0008KR CIL_0008KR_0002 VISTA 13:63268917-63869745
CIL_0002J8 CIL_0002J8_0002 CGP 13:63304709-63565520

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002262 IGI myeloid cell homeostasis
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005829 IEA cytosol
GO:0006289 IMP nucleotide-excision repair
GO:0007276 IMP gamete generation
GO:0007281 IMP germ cell development
GO:0019430 IGI removal of superoxide radicals
GO:0043240 IEA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055232 fancc Fanconi anemia, complementation group C protein_coding Danio_rerio
ENSG00000158169 FANCC Fanconi anemia, complementation group C protein_coding Homo_sapiens

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