C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Fanconi anemia, complementation group C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000289081 FANCC-001 ENSG00000158169 9606 - 9:95099054-95317702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLungOvaryPlacentaTestisENST00000289081
Transcript ID Adipose Breast Heart Lung Ovary Placenta Testis
ENST00000289081 0.438±0.00 0.767±0.00 0.297±0.00 1.099±0.00 0.925±0.05 0.747±0.02 3.164±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J5 CIL_0002J5_0001 CGP 9:94726701-95317709
CIL_0002J8 CIL_0002J8_0001 CGP 9:95099054-95517057

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002262 IEA myeloid cell homeostasis
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005829 IDA cytosol
GO:0006281 TAS:IEA DNA repair
GO:0006289 IEA nucleotide-excision repair
GO:0006461 TAS protein complex assembly
GO:0007276 IEA gamete generation
GO:0007281 IEA germ cell development
GO:0019430 IEA removal of superoxide radicals
GO:0043240 IDA Fanconi anaemia nuclear complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161977 Fancc-003 protein_coding Mus_musculus 0 1070
ENSMUST00000073029 Fancc-001 protein_coding Mus_musculus 0 1068
ENSMUST00000163091 Fancc-002 protein_coding Mus_musculus 0 1037
ENSMUST00000099444 Fancc-006 protein_coding Mus_musculus 0 935
ENSMUST00000160151 Fancc-005 retained_intron Mus_musculus 0 800
ENSMUST00000160333 Fancc-004 retained_intron Mus_musculus 0 756
ENSMUST00000162971 Fancc-008 protein_coding Mus_musculus 0 610
ENSMUST00000162375 Fancc-010 protein_coding Mus_musculus 0 580
ENSMUST00000159024 Fancc-017 protein_coding Mus_musculus 0 549

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