C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal peptide, CUB domain, EGF-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000159307 SCUBE1 9606 - 22:43197283-43343388 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000290460 SCUBE1-003 43237576-43343323 protein_coding
  ENST00000360835 SCUBE1-001 43197283-43343388 protein_coding
  ENST00000449304 SCUBE1-009 43231756-43262799 protein_coding
  ENST00000461595 SCUBE1-006 43316837-43320065 processed_transcript
  ENST00000470433 SCUBE1-008 43270137-43272514 processed_transcript
  ENST00000477991 SCUBE1-007 43270132-43272539 processed_transcript
  ENST00000480833 SCUBE1-005 43316958-43320065 processed_transcript
  ENST00000615096 SCUBE1-201 43203992-43343283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360835ENST00000449304ENST00000477991ENST00000615096
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360835 0.683±0.00 0.108±0.00 0.200±0.00 2.919±2.86 0.594±0.00 0.061±0.00 0.079±0.00 0.521±0.38 1.413±1.18 0.253±0.00 6.683±8.43 0.585±0.15 4.450±2.52
ENST00000449304 N/A N/A N/A N/A N/A N/A 0.381±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477991 N/A N/A N/A N/A N/A N/A 0.066±0.00 0.796±0.00 0.382±0.00 N/A 0.480±0.30 0.090±0.00 0.108±0.08
ENST00000615096 N/A 1.417±0.00 0.290±0.00 0.644±0.00 1.802±0.00 N/A N/A 1.457±0.00 0.956±0.00 0.383±0.00 2.090±0.00 4.066±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0001 VISTA 22:42800321-43401810
CIL_0008W4 CIL_0008W4_0001 VISTA 22:42938962-43540911
CIL_0004UW CIL_0004UW_0001 CGP 22:43166622-43343388
CIL_0004UX CIL_0004UX_0001 CGP 22:43197283-43507848

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0006954 NAS inflammatory response
GO:0007512 NAS adult heart development
GO:0007596 NAS blood coagulation
GO:0009791 NAS post-embryonic development
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0019897 IDA extrinsic component of plasma membrane
GO:0042802 IDA identical protein binding
GO:0045446 NAS endothelial cell differentiation
GO:0046982 IDA protein heterodimerization activity
GO:0051260 IPI protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000016763 Scube1 signal peptide, CUB domain, EGF-like 1 protein_coding Mus_musculus

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