C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360835 SCUBE1-001 ENSG00000159307 9606 - 22:43197283-43343388 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360835
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360835 0.683±0.00 0.108±0.00 0.200±0.00 2.919±2.86 0.594±0.00 0.061±0.00 0.079±0.00 0.521±0.38 1.413±1.18 0.253±0.00 6.683±8.43 0.585±0.15 4.450±2.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0001 VISTA 22:42800321-43401810
CIL_0008W4 CIL_0008W4_0001 VISTA 22:42938962-43540911
CIL_0004UW CIL_0004UW_0001 CGP 22:43166622-43343388
CIL_0004UX CIL_0004UX_0001 CGP 22:43197283-43507848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 TAS:IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0006954 NAS inflammatory response
GO:0007512 NAS adult heart development
GO:0007596 NAS blood coagulation
GO:0009791 NAS post-embryonic development
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0019897 IDA extrinsic component of plasma membrane
GO:0042802 IDA identical protein binding
GO:0045446 NAS endothelial cell differentiation
GO:0046982 IDA protein heterodimerization activity
GO:0051260 IPI protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171496 Scube1-201 protein_coding Mus_musculus 0 3576
ENSMUST00000076060 Scube1-001 protein_coding Mus_musculus 0 3520
ENSMUST00000144773 Scube1-004 retained_intron Mus_musculus 0 3225
ENSMUST00000016907 Scube1-002 protein_coding Mus_musculus 0 2532
ENSMUST00000043634 Scube1-003 protein_coding Mus_musculus 0 2531

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