C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal peptide, CUB domain, EGF-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016763 Scube1 10090 - 15:83602583-83725021 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016907 Scube1-002 83606506-83725021 protein_coding
  ENSMUST00000043634 Scube1-003 83605003-83725021 protein_coding
  ENSMUST00000076060 Scube1-001 83606506-83725021 protein_coding
  ENSMUST00000144773 Scube1-004 83604999-83725021 retained_intron
  ENSMUST00000171496 Scube1-201 83602583-83725021 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016907ENSMUST00000043634ENSMUST00000076060ENSMUST00000144773ENSMUST00000171496
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016907 6.968±6.98 1.737±1.01 1.807±0.58 N/A 0.706±0.31 1.278±0.33 0.300±0.09 0.361±0.15 0.034±0.00 1.782±0.47 0.069±0.03 4.182±1.15 0.820±0.82 0.220±0.10
ENSMUST00000043634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A
ENSMUST00000076060 5.229±5.19 2.181±0.55 N/A N/A 0.778±0.36 2.615±0.51 0.179±0.06 0.547±0.10 0.031±0.02 3.005±0.98 0.039±0.02 3.565±1.27 0.511±0.29 0.059±0.00
ENSMUST00000144773 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A 0.474±0.00 N/A N/A
ENSMUST00000171496 7.193±7.16 1.396±0.26 2.119±0.41 2.701±0.48 0.231±0.00 1.498±0.36 0.093±0.01 0.385±0.09 0.048±0.03 1.453±0.17 0.038±0.01 1.801±0.63 0.112±0.03 0.061±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004UW CIL_0004UW_0002 CGP 15:83575119-83725021
CIL_0004UX CIL_0004UX_0002 CGP 15:83602583-83858494

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005576 IEA extracellular region
GO:0005615 IEA extracellular space
GO:0009897 ISS external side of plasma membrane
GO:0009986 ISS cell surface
GO:0019897 IEA extrinsic component of plasma membrane
GO:0042802 IEA identical protein binding
GO:0046982 ISS protein heterodimerization activity
GO:0051260 ISS protein homooligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000159307 SCUBE1 signal peptide, CUB domain, EGF-like 1 protein_coding Homo_sapiens

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